From 8ef6e9d0e94a389dfbfe253b8858fcf382e58047 Mon Sep 17 00:00:00 2001
From: "K. Joeri van der Velde" <joeriv@gmail.com>
Date: Tue, 20 Jul 2021 14:48:59 +0200
Subject: [PATCH] Update LODE page

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-        </script></head><body><div class="head"><h1>FAIR Genomes metadata schema</h1><dl><dt>IRI:</dt><dd>https://w3id.org/fair-genomes/ontology/</dd></dl><dl><dt>Date:</dt><dd>15/07/2021</dd><dt>Current version:</dt><dd>1.0-Major</dd></dl><dl><dt>Authors:</dt><dd>Daphne Stemkens &lt;d.stemkens@vsop.nl&gt;</dd><dd>Esther van Enckevort &lt;e.j.van.enckevort@rug.nl&gt;</dd><dd>FAIR Genomes Consortium</dd><dd>Gurnoor Singh &lt;gurnoor1990@gmail.com&gt;</dd><dd>Jeroen A.M. Beliën &lt;jam.belien@amsterdamumc.nl&gt;</dd><dd>K. Joeri van der Velde &lt;k.j.van.der.velde@umcg.nl&gt;</dd><dd>Mariëlle E. van Gijn &lt;m.e.van.gijn@umcg.nl&gt;</dd><dd>Morris A. Swertz &lt;m.a.swertz@umcg.nl&gt;</dd><dd>Peter A.C. 't Hoen &lt;peter-bram.thoen@radboudumc.nl&gt;</dd><dd>Rajaram Kaliyaperumal &lt;R.Kaliyaperumal@lumc.nl&gt;</dd><dd>XiaoFeng Liao &lt;XiaoFeng.Liao@radboudumc.nl&gt;</dd><dd><a href="https://orcid.org/0000-0002-0934-8375">https://orcid.org/0000-0002-0934-8375</a></dd><dd><a href="https://orcid.org/0000-0002-0979-3401">https://orcid.org/0000-0002-0979-3401</a></dd><dd><a href="https://orcid.org/0000-0002-1073-0539">https://orcid.org/0000-0002-1073-0539</a></dd><dd><a href="https://orcid.org/0000-0002-1215-167X">https://orcid.org/0000-0002-1215-167X</a></dd><dd><a href="https://orcid.org/0000-0002-2440-3993">https://orcid.org/0000-0002-2440-3993</a></dd><dd><a href="https://orcid.org/0000-0002-4706-1084">https://orcid.org/0000-0002-4706-1084</a></dd><dd><a href="https://orcid.org/0000-0002-7160-5942">https://orcid.org/0000-0002-7160-5942</a></dd><dd><a href="https://orcid.org/0000-0003-1301-5204">https://orcid.org/0000-0003-1301-5204</a></dd><dd><a href="https://orcid.org/0000-0003-1615-4197">https://orcid.org/0000-0003-1615-4197</a></dd><dd><a href="https://orcid.org/0000-0003-4450-3112">https://orcid.org/0000-0003-4450-3112</a></dd><dt>Contributors:</dt><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-anatomicalsources.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-anatomicalsources.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-ancestry.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-ancestry.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-countries.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-countries.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-dataformats.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-dataformats.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-datausemodifiers.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-datausemodifiers.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-datausepermissions.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-datausepermissions.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-dcmitypes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-dcmitypes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-diseases.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-diseases.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-drugs.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-drugs.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-familymembers.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-familymembers.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genomeaccessions.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genomeaccessions.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genotypicsex.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genotypicsex.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-inclusioncriteria.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-inclusioncriteria.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-inclusionstatus.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-inclusionstatus.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-institutes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-institutes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-materialtypes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-materialtypes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-medicalhistory.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-medicalhistory.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-ngskits.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-ngskits.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-pathologicalstate.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-pathologicalstate.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-phenotypes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-phenotypes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-phenotypicsex.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-phenotypicsex.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-recontacting.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-recontacting.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-representedby.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-representedby.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencinginstrumentmodels.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencinginstrumentmodels.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencingmethods.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencingmethods.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencingplatform.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencingplatform.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-storageconditions.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-storageconditions.ttl</a></dd></dl><dl><dt>Publisher:</dt><dd><a href="https://github.com/fairgenomes/fairgenomes-semantic-model">https://github.com/fairgenomes/fairgenomes-semantic-model</a></dd></dl><dl><dt>Other visualisation:</dt><dd><a href="http://150.146.207.114/lode/source?url=https://raw.githubusercontent.com/fairgenomes/fairgenomes-semantic-model/main/generated/ontology/fair-genomes.ttl">Ontology source</a></dd></dl><div class="copyright"><p>This ontology is distributed under a Attribution 4.0 International (CC BY 4.0) License - <a href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</a>. Copyright: University Medical Center Groningen (2019-2021).</p>
+        </script></head><body><div class="head"><h1>FAIR Genomes metadata schema</h1><dl><dt>IRI:</dt><dd>https://w3id.org/fair-genomes/ontology/</dd></dl><dl><dt>Date:</dt><dd>20/07/2021</dd><dt>Current version:</dt><dd>1.1-Minor</dd></dl><dl><dt>Authors:</dt><dd>Daphne Stemkens &lt;d.stemkens@vsop.nl&gt;</dd><dd>Esther van Enckevort &lt;e.j.van.enckevort@rug.nl&gt;</dd><dd>FAIR Genomes Consortium</dd><dd>Gurnoor Singh &lt;gurnoor1990@gmail.com&gt;</dd><dd>Jeroen A.M. Beliën &lt;jam.belien@amsterdamumc.nl&gt;</dd><dd>K. Joeri van der Velde &lt;k.j.van.der.velde@umcg.nl&gt;</dd><dd>Mariëlle E. van Gijn &lt;m.e.van.gijn@umcg.nl&gt;</dd><dd>Morris A. Swertz &lt;m.a.swertz@umcg.nl&gt;</dd><dd>Peter A.C. 't Hoen &lt;peter-bram.thoen@radboudumc.nl&gt;</dd><dd>Rajaram Kaliyaperumal &lt;R.Kaliyaperumal@lumc.nl&gt;</dd><dd>XiaoFeng Liao &lt;XiaoFeng.Liao@radboudumc.nl&gt;</dd><dd><a href="https://orcid.org/0000-0002-0934-8375">https://orcid.org/0000-0002-0934-8375</a></dd><dd><a href="https://orcid.org/0000-0002-0979-3401">https://orcid.org/0000-0002-0979-3401</a></dd><dd><a href="https://orcid.org/0000-0002-1073-0539">https://orcid.org/0000-0002-1073-0539</a></dd><dd><a href="https://orcid.org/0000-0002-1215-167X">https://orcid.org/0000-0002-1215-167X</a></dd><dd><a href="https://orcid.org/0000-0002-2440-3993">https://orcid.org/0000-0002-2440-3993</a></dd><dd><a href="https://orcid.org/0000-0002-4706-1084">https://orcid.org/0000-0002-4706-1084</a></dd><dd><a href="https://orcid.org/0000-0002-7160-5942">https://orcid.org/0000-0002-7160-5942</a></dd><dd><a href="https://orcid.org/0000-0003-1301-5204">https://orcid.org/0000-0003-1301-5204</a></dd><dd><a href="https://orcid.org/0000-0003-1615-4197">https://orcid.org/0000-0003-1615-4197</a></dd><dd><a href="https://orcid.org/0000-0003-4450-3112">https://orcid.org/0000-0003-4450-3112</a></dd><dt>Contributors:</dt><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-anatomicalsources.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-anatomicalsources.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-ancestry.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-ancestry.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-biospecimentypes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-biospecimentypes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-countries.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-countries.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-dataformats.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-dataformats.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-datausemodifiers.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-datausemodifiers.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-datausepermissions.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-datausepermissions.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-dcmitypes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-dcmitypes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-diseases.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-diseases.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-drugs.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-drugs.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-familymembers.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-familymembers.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genomeaccessions.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genomeaccessions.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genotypicsex.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-genotypicsex.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-inclusioncriteria.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-inclusioncriteria.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-inclusionstatus.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-inclusionstatus.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-institutes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-institutes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-medicalhistory.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-medicalhistory.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-ngskits.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-ngskits.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-pathologicalstate.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-pathologicalstate.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-phenotypes.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-phenotypes.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-phenotypicsex.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-phenotypicsex.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-recontacting.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-recontacting.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-representedby.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-representedby.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencinginstrumentmodels.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencinginstrumentmodels.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencingmethods.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencingmethods.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencingplatform.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-sequencingplatform.ttl</a></dd><dd><a href="https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-storageconditions.ttl">https://fairgenomes.github.io/fairgenomes-semantic-model/generated/ontology/fair-genomes-storageconditions.ttl</a></dd></dl><dl><dt>Publisher:</dt><dd><a href="https://github.com/fairgenomes/fairgenomes-semantic-model">https://github.com/fairgenomes/fairgenomes-semantic-model</a></dd></dl><dl><dt>Other visualisation:</dt><dd><a href="http://150.146.207.114/lode/source?url=https://raw.githubusercontent.com/fairgenomes/fairgenomes-semantic-model/main/generated/ontology/fair-genomes.ttl">Ontology source</a></dd></dl><div class="copyright"><p>This ontology is distributed under a Attribution 4.0 International (CC BY 4.0) License - <a href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</a>. Copyright: University Medical Center Groningen (2019-2021).</p>
 </div></div><hr><div id="toc"><h2>Table of Content</h2><ol><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#introduction">Introduction</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#classes">Classes</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#objectproperties">Object Properties</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#dataproperties">Data Properties</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#annotationproperties">Annotation Properties</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#namespacedeclarations">Namespace Declarations</a></li></ol></div><h2 id="introduction">Introduction</h2><p>The FAIR Genomes semantic metadata schema to power reuse of NGS data in research and healthcare.</p>
 <div id="classes"><h2>Classes</h2><ul class="hlist"><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e2037" title="https://w3id.org/fair-genomes/ontology/Analysis">Analysis</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e2051" title="https://w3id.org/fair-genomes/ontology/Clinical">Clinical</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e2064" title="https://w3id.org/fair-genomes/ontology/Individual_consent">Individual consent</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e2077" title="https://w3id.org/fair-genomes/ontology/Leaflet_and_consent_form">Leaflet and consent form</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e2091" title="https://w3id.org/fair-genomes/ontology/Material">Material</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e2104" title="https://w3id.org/fair-genomes/ontology/Personal">Personal</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e2117" title="https://w3id.org/fair-genomes/ontology/Sample_preparation">Sample preparation</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e2131" title="https://w3id.org/fair-genomes/ontology/Sequencing">Sequencing</a></li><li><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e2144" title="https://w3id.org/fair-genomes/ontology/Study">Study</a></li></ul><div id="d4e2037" class="entity"><a name="https://w3id.org/fair-genomes/ontology/Analysis"></a><h3>Analysis<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#toc">ToC</a> or <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#classes">Class ToC</a></span></h3><p><strong>IRI:</strong> https://w3id.org/fair-genomes/ontology/Analysis</p><dl class="definedBy"><dt>is defined by</dt><dd><a href="http://edamontology.org/operation_2945">http://edamontology.org/operation_2945</a></dd></dl><dl class="description"><dt>is in domain of</dt><dd><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e906" title="https://w3id.org/fair-genomes/ontology/Analysis_Abstract_data_location">Abstract data location</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e922" title="https://w3id.org/fair-genomes/ontology/Analysis_Algorithms_used">Algorithms used</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e937" title="https://w3id.org/fair-genomes/ontology/Analysis_Analysis_identifier">Analysis identifier</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e160" title="https://w3id.org/fair-genomes/ontology/Analysis_Belongs_to_sequencing">Belongs to sequencing</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e952" title="https://w3id.org/fair-genomes/ontology/Analysis_Bioinformatic_protocol_deviation">Bioinformatic protocol deviation</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e968" title="https://w3id.org/fair-genomes/ontology/Analysis_Bioinformatic_protocol_used">Bioinformatic protocol used</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e175" title="https://w3id.org/fair-genomes/ontology/Analysis_Data_formats_stored">Data formats stored</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e983" title="https://w3id.org/fair-genomes/ontology/Analysis_Physical_data_location">Physical data location</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e998" title="https://w3id.org/fair-genomes/ontology/Analysis_Reason_for_bioinformatic_protocol_deviation">Reason for bioinformatic protocol deviation</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e192" title="https://w3id.org/fair-genomes/ontology/Analysis_Reference_genome_used">Reference genome used</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1014" title="https://w3id.org/fair-genomes/ontology/Analysis_WGS_guideline_followed">WGS guideline followed</a><sup title="data property" class="type-dp">dp</sup></dd></dl><div class="info"><p>An analysis applies analytical (often computational) methods to existing data of a specific type to produce some desired output.</p>
 </div></div><div id="d4e2051" class="entity"><a name="https://w3id.org/fair-genomes/ontology/Clinical"></a><h3>Clinical<sup title="class" class="type-c">c</sup><span class="backlink"> back to <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#toc">ToC</a> or <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#classes">Class ToC</a></span></h3><p><strong>IRI:</strong> https://w3id.org/fair-genomes/ontology/Clinical</p><dl class="definedBy"><dt>is defined by</dt><dd><a href="http://purl.obolibrary.org/obo/NCIT_C25398">http://purl.obolibrary.org/obo/NCIT_C25398</a></dd></dl><dl class="description"><dt>is in domain of</dt><dd><a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1029" title="https://w3id.org/fair-genomes/ontology/Clinical_Age_at_diagnosis">Age at diagnosis</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1044" title="https://w3id.org/fair-genomes/ontology/Clinical_Age_at_last_screening">Age at last screening</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1060" title="https://w3id.org/fair-genomes/ontology/Clinical_Age_of_onset">Age of onset</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e210" title="https://w3id.org/fair-genomes/ontology/Clinical_Belongs_to_person">Belongs to person</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e225" title="https://w3id.org/fair-genomes/ontology/Clinical_Clinical_diagnosis">Clinical diagnosis</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1075" title="https://w3id.org/fair-genomes/ontology/Clinical_Clinical_identifier">Clinical identifier</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1090" title="https://w3id.org/fair-genomes/ontology/Clinical_Consanguinity">Consanguinity</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1106" title="https://w3id.org/fair-genomes/ontology/Clinical_Drug_regimen">Drug regimen</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e242" title="https://w3id.org/fair-genomes/ontology/Clinical_Family_members_affected">Family members affected</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e260" title="https://w3id.org/fair-genomes/ontology/Clinical_Family_members_sequenced">Family members sequenced</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1121" title="https://w3id.org/fair-genomes/ontology/Clinical_First_contact">First contact</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1136" title="https://w3id.org/fair-genomes/ontology/Clinical_Functioning">Functioning</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1152" title="https://w3id.org/fair-genomes/ontology/Clinical_Material_used_in_diagnosis">Material used in diagnosis</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e277" title="https://w3id.org/fair-genomes/ontology/Clinical_Medical_history">Medical history</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e294" title="https://w3id.org/fair-genomes/ontology/Clinical_Medication">Medication</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e312" title="https://w3id.org/fair-genomes/ontology/Clinical_Molecular_diagnosis_gene">Molecular diagnosis gene</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e1167" title="https://w3id.org/fair-genomes/ontology/Clinical_Molecular_diagnosis_other">Molecular diagnosis other</a><sup title="data property" class="type-dp">dp</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e329" title="https://w3id.org/fair-genomes/ontology/Clinical_Phenotype">Phenotype</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e346" title="https://w3id.org/fair-genomes/ontology/Clinical_Phenotypic_data_available">Phenotypic data available</a><sup title="object property" class="type-op">op</sup>, <a href="http://150.146.207.114/lode/extract?url=https%3A%2F%2Fraw.githubusercontent.com%2Ffairgenomes%2Ffairgenomes-semantic-model%2Fmain%2Fgenerated%2Fontology%2Ffair-genomes.ttl&amp;owlapi=true&amp;lang=en#d4e364" title="https://w3id.org/fair-genomes/ontology/Clinical_Unobserved_phenotype">Unobserved phenotype</a><sup title="object property" class="type-op">op</sup></dd></dl><div class="info"><p>Findings and circumstances relating to the examination and treatment of a patient.</p>
