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Releases: esteinig/nanoq

Zenodo release

12 Mar 11:37
a354420
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Release to archive on Zenodo

0.1.0

11 Mar 23:44
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Main functions are working. No tests yet.

IO:

  • stream: stdin / stdout no flags or -
  • file: --fastq and --output filename

Filters:

  • --length minimum read length
  • --quality minimum average read quality
  • no filters set computes summary stats only

Summary stats to stderr:

  • number reads
  • base pairs total
  • longest read
  • shortest read
  • mean length
  • median length
  • mean quality
  • median quality