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mimiDb.txt
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mimiDb.txt
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Serotype Strain name Accession # (GenBank) Size of Chromosome (bp) No. of Plasmids G+C (%) # of Genes Sequencing Technology Strain information
O104:H- 4281-7 FM872416.1 (eae gene) na na na na na aEPEC strain (Brazil, 2009)
O104:H7 RM9387 CP009104 4,827,630 4 50.8 4,505 A combination of PacBio SMRT™ and Ion Torrent Cattle (US)
O104:H21 94-3024 CP009106 4.902585 1 50.7 4,539 A combination of PacBio SMRT™ and Ion Torrent Human stool from an outbreak, Montana, US, 1994
O104:H21 BAA-178 (CDC 1994-3024) (CFSAN002236) SRX319158 4,898,581 1 50.7 na Ion Torrent Human stool from an outbreak, Montana, US, 1994
O104:H21 BAA-182 (CDC 1994-3023) (CFSAN002237) SRX319159 4,897,294 1 50.7 na Ion Torrent Human stool from an outbreak, Montana, US, 1994
O104:H4 2009EL-2050 NC_018650.1 5,253,138 2 50.7 4,969 a combination of Illumina and 454 technologies stx2a+; aggr+, aatA+, and positive for fermentation of sorbitol, lactose and β-glucuronidase. eae; ehxA-, and CefS (Republic of Georgia)
O104:H4 2009EL-2071 NC_018661.1 5,312,586 1 50.7 5,039 a combination of Illumina and 454 technologies stx2a+; aggr+, aatA +, and positive for fermentation of sorbitol, lactose and β-glucuronidase. eae; ehxA-, and CefS (Republic of Georgia)
O104:H4 2011C-3493 NC_018658.1 5,273,097 2 50.7 4,974 a combination of Illumina and 454 technologies stx2a+; aggr+, aatA +, and positive for fermentation of sorbitol, lactose and β-glucuronidase. eae; ehxA-, CTX15M-positive and CefR (Germany)
O104:H4 LB226692 AFOB02000001-AFOB02000356; SRR254209 5,189,625 na 50.7 na Ion Torrent stool sample from patient with hemolytic uremic syndrome (Germany)
O104:H4 TY-2482 AFOG01000001-AFOG01000451 SRX067313 5,178,909 na 50.7 na Ion Torrent stool sample from patient with hemolytic uremic syndrome (Germany)
O104:H4 C760-09 SRX078303 4,894,831 na 50.9 na PacBio SMRT™ Stool sample from child without diarrhea, not from a single clonal outbreak (Africa, 2008)
O104:H4 C777-09 SRX078304 5.207,617 na 50.8 na PacBio SMRT™ Stool sample from child with diarrhea, not from a single clonal outbreak (Africa, 2008)
O104:H4 C734-09 SRX078308 5,114,139 na 50.7 na PacBio SMRT™ Stool sample from child without diarrhea, not from a single clonal outbreak (Africa, 2008)
O104:H4 C754-09 SRX078302 5,239,818 na 51.4 na PacBio SMRT™ Stool sample from child without diarrhea, not from a single clonal outbreak (Africa, 2008)