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implement contrasts #29

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sreichl opened this issue Nov 24, 2024 · 0 comments
Open
1 of 3 tasks

implement contrasts #29

sreichl opened this issue Nov 24, 2024 · 0 comments
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enhancement New feature or request

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@sreichl
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sreichl commented Nov 24, 2024

consider (again) how to implement contrasts

  • Consider changing the whole module to a one-datasets setup, like in spilterlize_integrat. Then the contrasts, and all other configs, could be integrated into the config file. Con: one workflow instance/module load per analysis. Q: How often do we analyze each split?
  • For the README, add code of improved examples for contrasts based on what I've recently done. This will help everyone without needing extra resources. Complement the contrast matrix, which is hard to understand, with a variable case.
  • Think about adding contrasts with an additional column in the annotation file. Possible?
@sreichl sreichl self-assigned this Nov 26, 2024
@sreichl sreichl added the enhancement New feature or request label Nov 26, 2024
sreichl added a commit that referenced this issue Nov 26, 2024
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