map features to genomic regions

[sreichl]

helper script to map features to genomic regions as BED files (code exists)
Add all mentioned helper scripts to the respective recipes and link from the main repository to the recipe so it’s always in one place. add it as a interface rule for ATAC-seq/ChIP-seq data between DEA and enrichment analysis

share script as gist and mention in docs here and enrichment_analysis?

[sreichl]

https://github.com/epigen/dea_limma/tree/generate_bed_files

[sreichl]

#19

[sreichl]

how in ATAC-seq recipe how it's done using helper script and one intermediate rule in the .smk
input .txt and feature annot
output .bed
specified with wildcards from enrichment analysis module to only convert required files