From 5c1bff8c6f9f9d12a7b25f5ffb4d735611aebcae Mon Sep 17 00:00:00 2001 From: Javier Date: Tue, 16 Jul 2024 13:13:24 +0200 Subject: [PATCH 1/3] First template formatting of internal terms --- internal-dev/bao-ext.owl | 20 +- internal-dev/efo-ext.owl | 24 +- internal-dev/endpoints.owl | 18 + internal-dev/ncit-ext.owl | 24 +- internal-dev/templates/bioassay.csv | 42 +++ internal-dev/templates/biological_process.csv | 10 + internal-dev/templates/cell_line.csv | 24 ++ internal-dev/templates/chemical_entities.csv | 123 +++++++ internal-dev/templates/chemical_methods.csv | 6 + internal-dev/templates/endpoints.csv | 99 ++++++ internal-dev/templates/enms.csv | 335 ++++++++++++++++++ .../templates/experimental_factors.csv | 15 + internal-dev/templates/pchem.csv | 10 + scripts/src/internal_terms_update.sh | 114 ++++++ 14 files changed, 822 insertions(+), 42 deletions(-) create mode 100644 internal-dev/templates/bioassay.csv create mode 100644 internal-dev/templates/biological_process.csv create mode 100644 internal-dev/templates/cell_line.csv create mode 100644 internal-dev/templates/chemical_entities.csv create mode 100644 internal-dev/templates/chemical_methods.csv create mode 100644 internal-dev/templates/endpoints.csv create mode 100644 internal-dev/templates/enms.csv create mode 100644 internal-dev/templates/experimental_factors.csv create mode 100644 internal-dev/templates/pchem.csv create mode 100644 scripts/src/internal_terms_update.sh diff --git a/internal-dev/bao-ext.owl b/internal-dev/bao-ext.owl index 6ff24539..e10fce36 100644 --- a/internal-dev/bao-ext.owl +++ b/internal-dev/bao-ext.owl @@ -69,17 +69,7 @@ A sequence of characters used to identify a sample. sample identifier - - - - - - - - The ability of a chemical substance to dissolve in a solid, liquid, or gaseous solvent to form a homogeneous solution. The solubility of a given substance is dependent on the solvent used, as well as on temperature and pressure. - solubility endpoint - - + @@ -336,14 +326,6 @@ - - - - - - - nanoparticle uptake efficiency endpoint - diff --git a/internal-dev/efo-ext.owl b/internal-dev/efo-ext.owl index 6084c51b..17dae8c6 100644 --- a/internal-dev/efo-ext.owl +++ b/internal-dev/efo-ext.owl @@ -70,15 +70,19 @@ - - - - C57BL/6 mouse derived cell line - - - - - - + + + Organic matter in medium + + + + + + + Pulmonary exposure is performed by instillation of test substance dispersed in a liquid vehicle. The liquid is delivered/blown into the lungs of sedated animals. The exposure is a bolus exposure and the dose is delivered within seconds. + Pulmonary instillation + + + diff --git a/internal-dev/endpoints.owl b/internal-dev/endpoints.owl index 2da31cbb..d7048b2c 100644 --- a/internal-dev/endpoints.owl +++ b/internal-dev/endpoints.owl @@ -965,6 +965,24 @@ + + + + + + + + nanoparticle uptake efficiency endpoint + + + + + + + The ability of a chemical substance to dissolve in a solid, liquid, or gaseous solvent to form a homogeneous solution. The solubility of a given substance is dependent on the solvent used, as well as on temperature and pressure. + solubility endpoint + + diff --git a/internal-dev/ncit-ext.owl b/internal-dev/ncit-ext.owl index c10281ad..de66b955 100644 --- a/internal-dev/ncit-ext.owl +++ b/internal-dev/ncit-ext.owl @@ -11,15 +11,7 @@ Javier Millan Acosta - - - - - - - Pulmonary exposure is performed by instillation of test substance dispersed in a liquid vehicle. The liquid is delivered/blown into the lungs of sedated animals. The exposure is a bolus exposure and the dose is delivered within seconds. - Pulmonary instillation - + @@ -134,10 +126,16 @@ - - - Organic matter in medium - + + + + C57BL/6 mouse derived cell line + + + + + + diff --git a/internal-dev/templates/bioassay.csv b/internal-dev/templates/bioassay.csv new file mode 100644 index 00000000..a37c195b --- /dev/null +++ b/internal-dev/templates/bioassay.csv @@ -0,0 +1,42 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +CHMO:0000087,,http://purl.obolibrary.org/obo/CHMO_0000087,,,http://purl.enanomapper.net/onto/ENM_5562662,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0000916,,http://purl.obolibrary.org/obo/OBI_0000916,,,http://purl.enanomapper.net/onto/ENM_0801504|http://purl.enanomapper.net/onto/ENM_3323766|http://purl.enanomapper.net/onto/ENM_4869361|http://purl.enanomapper.net/onto/ENM_9802609,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0001501,,http://purl.obolibrary.org/obo/OBI_0001501,,,http://purl.enanomapper.net/onto/ENM_3221617,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0801504,"5(6)-Carboxy-2′,7′-dichlorofluorescein diacetate assay",http://purl.enanomapper.net/onto/ENM_0801504,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1530072,Thiobarbituric Acid Reactive Substances assay,http://purl.enanomapper.net/onto/ENM_1530072,,http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1648790,Chemiluminiscence of luminol assay detecting reactive oxygen species ex vivo,http://purl.enanomapper.net/onto/ENM_1648790,,http://www.bioassayontology.org/bao#BAO_0000208 some http://purl.enanomapper.net/onto/ENM_3332709|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1648791,HPI assay,http://purl.enanomapper.net/onto/ENM_1648791,,http://www.bioassayontology.org/bao#BAO_0010053,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3221617,H2DCFDA fluorescence assay,http://purl.enanomapper.net/onto/ENM_3221617,,http://purl.obolibrary.org/obo/OBI_0001501|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3323766,Dihydroethidium flow cytometry assay,http://purl.enanomapper.net/onto/ENM_3323766,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3323768,Cellular glutathione quantification assay,http://purl.enanomapper.net/onto/ENM_3323768,,http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,http://purl.enanomapper.net/onto/ENM_5666044,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3332709,,http://purl.enanomapper.net/onto/ENM_3332709,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_4869361,Dichlorodihydrofluorescein flow cytometry assay,http://purl.enanomapper.net/onto/ENM_4869361,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5562662,Rhodamine 123 fluorescence microscopy assay,http://purl.enanomapper.net/onto/ENM_5562662,,http://purl.obolibrary.org/obo/CHMO_0000087|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5666044,MCB cellular GSH quantification assay,http://purl.enanomapper.net/onto/ENM_5666044,,http://purl.enanomapper.net/onto/ENM_3323768,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5723277,Autophagy assay,http://purl.enanomapper.net/onto/ENM_5723277,,http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002993,http://purl.enanomapper.net/onto/ENM_5723278,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5723278,LC3B II assay,http://purl.enanomapper.net/onto/ENM_5723278,,http://purl.enanomapper.net/onto/ENM_5723277,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_8100001,IC50 (Hill model),http://purl.enanomapper.net/onto/ENM_8100001,,http://www.bioassayontology.org/bao#BAO_0000190 and (http://www.bioassayontology.org/bao#BAO_0000335 some http://www.bioassayontology.org/bao#BAO_0000435),,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_8100002,HPRT - gene mutation base test,http://purl.enanomapper.net/onto/ENM_8100002,,http://www.bioassayontology.org/bao#BAO_0002167,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9802609,DHR123 flow cytometry assay,http://purl.enanomapper.net/onto/ENM_9802609,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000235,colony forming efficiency (CFE) assay,http://purl.enanomapper.org/onto/ENM_8000235,,http://www.bioassayontology.org/bao#BAO_0002993,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000013,WST-1,http://purl.enanomapper.org/onto/ENM_9000013,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000015,Physicochemical Characterization,http://purl.enanomapper.org/onto/ENM_9000015,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000017,DNA Damage Assay,http://purl.enanomapper.org/onto/ENM_9000017,,http://www.bioassayontology.org/bao#BAO_0002167,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000018,Cell Membrane Integrity Assay,http://purl.enanomapper.org/onto/ENM_9000018,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000049,premises identifier,http://purl.enanomapper.org/onto/ENM_9000049,,http://www.bioassayontology.org/bao#BAO_0000520,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000070,measurement identifier,http://purl.enanomapper.org/onto/ENM_9000070,,http://www.bioassayontology.org/bao#BAO_0000520,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000071,sample identifier,http://purl.enanomapper.org/onto/ENM_9000071,,http://www.bioassayontology.org/bao#BAO_0000520,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000266,WST-8 Cell Proliferation Assay,http://purl.enanomapper.org/onto/ENM_9000266,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000268,Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) assay,http://purl.enanomapper.org/onto/ENM_9000268,,http://www.bioassayontology.org/bao#BAO_0010019,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000269,Impedance-based cell assay,http://purl.enanomapper.org/onto/ENM_9000269,,http://www.bioassayontology.org/bao#BAO_0000015,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000015,,http://www.bioassayontology.org/bao#BAO_0000015,,,http://purl.enanomapper.org/onto/ENM_9000269,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000143,,http://www.bioassayontology.org/bao#BAO_0000143,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000190,,http://www.bioassayontology.org/bao#BAO_0000190,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000435,,http://www.bioassayontology.org/bao#BAO_0000435,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000520,,http://www.bioassayontology.org/bao#BAO_0000520,,,http://purl.enanomapper.org/onto/ENM_9000049|http://purl.enanomapper.org/onto/ENM_9000070|http://purl.enanomapper.org/onto/ENM_9000071,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0002167,,http://www.bioassayontology.org/bao#BAO_0002167,,,http://purl.enanomapper.net/onto/ENM_8100002|http://purl.enanomapper.org/onto/ENM_9000017,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0002168,,http://www.bioassayontology.org/bao#BAO_0002168,,,http://purl.enanomapper.net/onto/ENM_0801504|http://purl.enanomapper.net/onto/ENM_1530072|http://purl.enanomapper.net/onto/ENM_1648790|http://purl.enanomapper.net/onto/ENM_3323768,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0002993,,http://www.bioassayontology.org/bao#BAO_0002993,,,http://purl.enanomapper.net/onto/ENM_5723277|http://purl.enanomapper.org/onto/ENM_8000235,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0003009,,http://www.bioassayontology.org/bao#BAO_0003009,,,http://purl.enanomapper.org/onto/ENM_9000013|http://purl.enanomapper.org/onto/ENM_9000015|http://purl.enanomapper.org/onto/ENM_9000018|http://purl.enanomapper.org/onto/ENM_9000266,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0010019,,http://www.bioassayontology.org/bao#BAO_0010019,,,http://purl.enanomapper.org/onto/ENM_9000268,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0010053,,http://www.bioassayontology.org/bao#BAO_0010053,,,http://purl.enanomapper.net/onto/ENM_1648791,,,,,http://www.w3.org/2002/07/owl#Class,, diff --git a/internal-dev/templates/biological_process.csv b/internal-dev/templates/biological_process.csv new file mode 100644 index 00000000..41acbaaf --- /dev/null +++ b/internal-dev/templates/biological_process.csv @@ -0,0 +1,10 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +BFO:0000016,,http://purl.obolibrary.org/obo/BFO_0000016,,,http://purl.enanomapper.org/onto/ENM_8000316,,,,,http://www.w3.org/2002/07/owl#Class,, +GO:0002433,,http://purl.obolibrary.org/obo/GO_0002433,,,http://purl.enanomapper.net/onto/ENM_2866079|http://purl.enanomapper.net/onto/ENM_9822611,,,,,http://www.w3.org/2002/07/owl#Class,, +GO:0003824,,http://purl.obolibrary.org/obo/GO_0003824,,,http://purl.enanomapper.net/onto/ENM_5865566,,,,,http://www.w3.org/2002/07/owl#Class,, +GO:0008150,,http://purl.obolibrary.org/obo/GO_0008150,,,http://purl.enanomapper.net/onto/ENM_9912998,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_2866079,Complement receptor-mediated phagocytic pathway,http://purl.enanomapper.net/onto/ENM_2866079,,http://purl.obolibrary.org/obo/GO_0002433,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5865566,Cathepsin activity,http://purl.enanomapper.net/onto/ENM_5865566,,http://purl.obolibrary.org/obo/GO_0003824,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9822611,Mannose receptor-mediated phagocytic pathway,http://purl.enanomapper.net/onto/ENM_9822611,,http://purl.obolibrary.org/obo/GO_0002433,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9912998,Biodegradation,http://purl.enanomapper.net/onto/ENM_9912998,,http://purl.obolibrary.org/obo/GO_0008150,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000316,Photocatalytic activity,http://purl.enanomapper.org/onto/ENM_8000316,,http://purl.obolibrary.org/obo/BFO_0000016,,,,,,http://www.w3.org/2002/07/owl#Class,, diff --git a/internal-dev/templates/cell_line.csv b/internal-dev/templates/cell_line.csv new file mode 100644 index 00000000..c79cb5b9 --- /dev/null +++ b/internal-dev/templates/cell_line.csv @@ -0,0 +1,24 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +BTO:0000763,,http://purl.obolibrary.org/obo/BTO_0000763,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +BTO:0001034,,http://purl.obolibrary.org/obo/BTO_0001034,,,http://purl.enanomapper.net/onto/ENM_0893129,,,,,http://www.w3.org/2002/07/owl#Class,, +BTO:0002042,,http://purl.obolibrary.org/obo/BTO_0002042,,,http://purl.enanomapper.net/onto/ENM_0893129,,,,,http://www.w3.org/2002/07/owl#Class,, +CL:0000010,,http://purl.obolibrary.org/obo/CL_0000010,,,http://purl.enanomapper.net/onto/ENM_0617899|http://purl.enanomapper.net/onto/ENM_0951914,,,,,http://www.w3.org/2002/07/owl#Class,, +CL:0000233,,http://purl.obolibrary.org/obo/CL_0000233,,,http://purl.enanomapper.net/onto/ENM_2866074,,,,,http://www.w3.org/2002/07/owl#Class,, +CL:0001035,,http://purl.obolibrary.org/obo/CL_0001035,,http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C12366,,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C12366,,http://purl.obolibrary.org/obo/NCIT_C12366,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C14238,,http://purl.obolibrary.org/obo/NCIT_C14238,,,http://purl.enanomapper.net/onto/ENM_2659304,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C14424,,http://purl.obolibrary.org/obo/NCIT_C14424,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C160998,,http://purl.obolibrary.org/obo/NCIT_C160998,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C20222,,http://purl.obolibrary.org/obo/NCIT_C20222,,http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C160998,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0617835,Human mesothelioma cell line,http://purl.enanomapper.net/onto/ENM_0617835,,http://www.ebi.ac.uk/efo/EFO_0001639|http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0617899,C57BL/6 mouse derived cell line,http://purl.enanomapper.net/onto/ENM_0617899,,http://purl.obolibrary.org/obo/CL_0000010|http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C14424,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0893129,Murine dendritic cell line,http://purl.enanomapper.net/onto/ENM_0893129,,http://purl.obolibrary.org/obo/BTO_0001034|http://purl.obolibrary.org/obo/BTO_0002042|http://www.ebi.ac.uk/efo/EFO_0002887|http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0951914,Lung cell line,http://purl.enanomapper.net/onto/ENM_0951914,,http://purl.obolibrary.org/obo/CL_0000010|http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/BTO_0000763,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_2659304,HsdOla:TO mouse,http://purl.enanomapper.net/onto/ENM_2659304,,http://purl.obolibrary.org/obo/NCIT_C14238,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_2866074,Mouse platelets,http://purl.enanomapper.net/onto/ENM_2866074,,http://purl.obolibrary.org/obo/CL_0000233|http://www.ebi.ac.uk/efo/EFO_0001643|http://www.ebi.ac.uk/efo/EFO_0002887|http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_7054247,CCL-131,http://purl.enanomapper.net/onto/ENM_7054247,,http://www.ebi.ac.uk/efo/EFO_0002887|http://www.ebi.ac.uk/efo/EFO_0005214,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0001639,,http://www.ebi.ac.uk/efo/EFO_0001639,,,http://purl.enanomapper.net/onto/ENM_0617835,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0001643,,http://www.ebi.ac.uk/efo/EFO_0001643,,,http://purl.enanomapper.net/onto/ENM_2866074,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0002887,,http://www.ebi.ac.uk/efo/EFO_0002887,,,http://purl.enanomapper.net/onto/ENM_0893129|http://purl.enanomapper.net/onto/ENM_2866074|http://purl.enanomapper.net/onto/ENM_7054247,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0002888,,http://www.ebi.ac.uk/efo/EFO_0002888,,,http://purl.enanomapper.net/onto/ENM_0617835|http://purl.enanomapper.net/onto/ENM_0893129|http://purl.enanomapper.net/onto/ENM_2866074,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0005214,,http://www.ebi.ac.uk/efo/EFO_0005214,,,http://purl.enanomapper.net/onto/ENM_7054247,,,,,http://www.w3.org/2002/07/owl#Class,, diff --git a/internal-dev/templates/chemical_entities.csv b/internal-dev/templates/chemical_entities.csv new file mode 100644 index 00000000..2a0094fa --- /dev/null +++ b/internal-dev/templates/chemical_entities.csv @@ -0,0 +1,123 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +CHEBI:33232,,http://purl.obolibrary.org/obo/CHEBI_33232,,,http://purl.enanomapper.org/onto/ENM_8000123|http://purl.enanomapper.org/onto/ENM_8000124|http://purl.enanomapper.org/onto/ENM_8000125|http://purl.enanomapper.org/onto/ENM_8000126|http://purl.enanomapper.org/onto/ENM_8000127|http://purl.enanomapper.org/onto/ENM_8000128|http://purl.enanomapper.org/onto/ENM_8000129|http://purl.enanomapper.org/onto/ENM_8000130|http://purl.enanomapper.org/onto/ENM_8000131|http://purl.enanomapper.org/onto/ENM_8000132|http://purl.enanomapper.org/onto/ENM_8000133|http://purl.enanomapper.org/onto/ENM_8000134|http://purl.enanomapper.org/onto/ENM_8000135|http://purl.enanomapper.org/onto/ENM_8000136|http://purl.enanomapper.org/onto/ENM_8000137|http://purl.enanomapper.org/onto/ENM_8000138|http://purl.enanomapper.org/onto/ENM_8000139|http://purl.enanomapper.org/onto/ENM_8000140|http://purl.enanomapper.org/onto/ENM_8000141|http://purl.enanomapper.org/onto/ENM_8000142|http://purl.enanomapper.org/onto/ENM_8000143|http://purl.enanomapper.org/onto/ENM_8000144|http://purl.enanomapper.org/onto/ENM_8000145|http://purl.enanomapper.org/onto/ENM_8000146|http://purl.enanomapper.org/onto/ENM_8000147|http://purl.enanomapper.org/onto/ENM_8000148|http://purl.enanomapper.org/onto/ENM_8000149|http://purl.enanomapper.org/onto/ENM_8000150|http://purl.enanomapper.org/onto/ENM_8000151|http://purl.enanomapper.org/onto/ENM_8000152|http://purl.enanomapper.org/onto/ENM_8000153|http://purl.enanomapper.org/onto/ENM_8000154|http://purl.enanomapper.org/onto/ENM_8000155|http://purl.enanomapper.org/onto/ENM_8000156|http://purl.enanomapper.org/onto/ENM_8000157|http://purl.enanomapper.org/onto/ENM_8000158|http://purl.enanomapper.org/onto/ENM_8000159|http://purl.enanomapper.org/onto/ENM_8000160|http://purl.enanomapper.org/onto/ENM_8000161|http://purl.enanomapper.org/onto/ENM_8000162|http://purl.enanomapper.org/onto/ENM_8000163|http://purl.enanomapper.org/onto/ENM_8000164|http://purl.enanomapper.org/onto/ENM_8000165|http://purl.enanomapper.org/onto/ENM_8000166|http://purl.enanomapper.org/onto/ENM_8000167|http://purl.enanomapper.org/onto/ENM_8000168|http://purl.enanomapper.org/onto/ENM_8000169|http://purl.enanomapper.org/onto/ENM_8000170|http://purl.enanomapper.org/onto/ENM_8000171|http://purl.enanomapper.org/onto/ENM_8000172|http://purl.enanomapper.org/onto/ENM_8000173|http://purl.enanomapper.org/onto/ENM_8000174|http://purl.enanomapper.org/onto/ENM_8000175|http://purl.enanomapper.org/onto/ENM_8000176|http://purl.enanomapper.org/onto/ENM_8000177|http://purl.enanomapper.org/onto/ENM_8000178|http://purl.enanomapper.org/onto/ENM_8000179|http://purl.enanomapper.org/onto/ENM_8000180|http://purl.enanomapper.org/onto/ENM_8000181|http://purl.enanomapper.org/onto/ENM_8000182|http://purl.enanomapper.org/onto/ENM_8000183|http://purl.enanomapper.org/onto/ENM_8000184|http://purl.enanomapper.org/onto/ENM_8000185|http://purl.enanomapper.org/onto/ENM_8000186|http://purl.enanomapper.org/onto/ENM_8000187|http://purl.enanomapper.org/onto/ENM_8000188|http://purl.enanomapper.org/onto/ENM_8000189|http://purl.enanomapper.org/onto/ENM_8000190|http://purl.enanomapper.org/onto/ENM_8000191|http://purl.enanomapper.org/onto/ENM_8000192|http://purl.enanomapper.org/onto/ENM_8000193|http://purl.enanomapper.org/onto/ENM_8000194|http://purl.enanomapper.org/onto/ENM_8000195|http://purl.enanomapper.org/onto/ENM_8000196|http://purl.enanomapper.org/onto/ENM_8000197|http://purl.enanomapper.org/onto/ENM_8000198|http://purl.enanomapper.org/onto/ENM_8000199|http://purl.enanomapper.org/onto/ENM_8000200|http://purl.enanomapper.org/onto/ENM_8000201|http://purl.enanomapper.org/onto/ENM_8000202|http://purl.enanomapper.org/onto/ENM_8000203|http://purl.enanomapper.org/onto/ENM_8000204|http://purl.enanomapper.org/onto/ENM_8000205|http://purl.enanomapper.org/onto/ENM_8000206|http://purl.enanomapper.org/onto/ENM_8000207|http://purl.enanomapper.org/onto/ENM_8000208|http://purl.enanomapper.org/onto/ENM_8000209|http://purl.enanomapper.org/onto/ENM_8000210|http://purl.enanomapper.org/onto/ENM_8000211|http://purl.enanomapper.org/onto/ENM_8000212|http://purl.enanomapper.org/onto/ENM_8000213|http://purl.enanomapper.org/onto/ENM_8000214|http://purl.enanomapper.org/onto/ENM_8000215|http://purl.enanomapper.org/onto/ENM_8000216|http://purl.enanomapper.org/onto/ENM_8000217|http://purl.enanomapper.org/onto/ENM_8000218|http://purl.enanomapper.org/onto/ENM_8000219|http://purl.enanomapper.org/onto/ENM_8000220|http://purl.enanomapper.org/onto/ENM_8000221,,,,,http://www.w3.org/2002/07/owl#Class,, +CHEBI:33416,,http://purl.obolibrary.org/obo/CHEBI_33416,,,http://purl.enanomapper.org/onto/ENM_9000026,,,,,http://www.w3.org/2002/07/owl#Class,, +CHEBI:48730,,http://purl.obolibrary.org/obo/CHEBI_48730,,,http://purl.enanomapper.org/onto/ENM_8000239,,,,,http://www.w3.org/2002/07/owl#Class,, +CHEBI:51086,,http://purl.obolibrary.org/obo/CHEBI_51086,,,http://purl.enanomapper.org/onto/ENM_0000073,,,,,http://www.w3.org/2002/07/owl#Class,, +CHEBI:52855,,http://purl.obolibrary.org/obo/CHEBI_52855,,,http://purl.enanomapper.org/onto/ENM_9000014|http://purl.enanomapper.org/onto/ENM_9000028,,,,,http://www.w3.org/2002/07/owl#Class,, +CHEBI:60004,,http://purl.obolibrary.org/obo/CHEBI_60004,,,http://purl.enanomapper.net/onto/ENM_9116388,,,,,http://www.w3.org/2002/07/owl#Class,, +ENVO:01000508,,http://purl.obolibrary.org/obo/ENVO_01000508,,,http://purl.enanomapper.org/onto/ENM_8000240,,,,,http://www.w3.org/2002/07/owl#Class,, +ENVO:01000845,,http://purl.obolibrary.org/obo/ENVO_01000845,,,http://purl.enanomapper.org/onto/ENM_8000245|http://purl.enanomapper.org/onto/ENM_8000314|http://purl.enanomapper.org/onto/ENM_8000315,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_1486,,http://purl.bioontology.org/ontology/npo#NPO_1486,,,http://purl.enanomapper.org/onto/ENM_8000314|http://purl.enanomapper.org/onto/ENM_8000315,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9116388,CeO2/Co3O4 nanoparticle,http://purl.enanomapper.net/onto/ENM_9116388,,http://purl.enanomapper.org/onto/ENM_9000006|http://purl.enanomapper.org/onto/ENM_9000248|http://purl.obolibrary.org/obo/CHEBI_60004,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000073,extractant,http://purl.enanomapper.org/onto/ENM_0000073,,http://purl.obolibrary.org/obo/CHEBI_51086,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000123,anticondensation agent,http://purl.enanomapper.org/onto/ENM_8000123,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000124,antifreeze agent,http://purl.enanomapper.org/onto/ENM_8000124,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000125,antiredeposition agent,http://purl.enanomapper.org/onto/ENM_8000125,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000126,antiscaling agent,http://purl.enanomapper.org/onto/ENM_8000126,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000127,antistain agent,http://purl.enanomapper.org/onto/ENM_8000127,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000128,antistatic agent,http://purl.enanomapper.org/onto/ENM_8000128,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000129,antistreaking agent,http://purl.enanomapper.org/onto/ENM_8000129,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000130,chain transfer agent,http://purl.enanomapper.org/onto/ENM_8000130,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000131,cleaning agent,http://purl.enanomapper.org/onto/ENM_8000131,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000132,coalescing agent,http://purl.enanomapper.org/onto/ENM_8000132,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000133,conductive agent,http://purl.enanomapper.org/onto/ENM_8000133,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000134,dispersing agent,http://purl.enanomapper.org/onto/ENM_8000134,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000135,durability agent,http://purl.enanomapper.org/onto/ENM_8000135,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000136,dusting agent,http://purl.enanomapper.org/onto/ENM_8000136,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000137,embalming agent,http://purl.enanomapper.org/onto/ENM_8000137,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000138,etching agent,http://purl.enanomapper.org/onto/ENM_8000138,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000139,finishing agents,http://purl.enanomapper.org/onto/ENM_8000139,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000140,fire extinguishing agent,http://purl.enanomapper.org/onto/ENM_8000140,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000141,fixing agent,http://purl.enanomapper.org/onto/ENM_8000141,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000142,flocculating agent,http://purl.enanomapper.org/onto/ENM_8000142,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000143,flotation agent,http://purl.enanomapper.org/onto/ENM_8000143,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000144,flux agent,http://purl.enanomapper.org/onto/ENM_8000144,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000145,friction agent,http://purl.enanomapper.org/onto/ENM_8000145,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000146,heat transferring agent,http://purl.enanomapper.org/onto/ENM_8000146,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000147,impregnation agent,http://purl.enanomapper.org/onto/ENM_8000147,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000148,incandescent agent,http://purl.enanomapper.org/onto/ENM_8000148,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000149,ion exchange agent,http://purl.enanomapper.org/onto/ENM_8000149,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000150,leaching agent,http://purl.enanomapper.org/onto/ENM_8000150,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000151,lubricating agent,http://purl.enanomapper.org/onto/ENM_8000151,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000152,luminescent agent,http://purl.enanomapper.org/onto/ENM_8000152,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000153,oxidizing agent,http://purl.enanomapper.org/onto/ENM_8000153,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000154,pH regulating agent,http://purl.enanomapper.org/onto/ENM_8000154,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000155,plating agent,http://purl.enanomapper.org/onto/ENM_8000155,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000156,pressure transfer agent,http://purl.enanomapper.org/onto/ENM_8000156,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000157,blowing agents,http://purl.enanomapper.org/onto/ENM_8000157,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000158,removal agent,http://purl.enanomapper.org/onto/ENM_8000158,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000159,sizing agent,http://purl.enanomapper.org/onto/ENM_8000159,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000160,solids separation (precipitating) agent,http://purl.enanomapper.org/onto/ENM_8000160,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000161,stabilizing agent,http://purl.enanomapper.org/onto/ENM_8000161,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000162,tanning agent,http://purl.enanomapper.org/onto/ENM_8000162,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, 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+http://purl.enanomapper.org/onto/ENM_8000178,compatibilizer,http://purl.enanomapper.org/onto/ENM_8000178,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000179,crystal growth modifiers,http://purl.enanomapper.org/onto/ENM_8000179,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000180,deflocculant,http://purl.enanomapper.org/onto/ENM_8000180,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000181,defoamer,http://purl.enanomapper.org/onto/ENM_8000181,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000182,demulsifier,http://purl.enanomapper.org/onto/ENM_8000182,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000183,density modifier,http://purl.enanomapper.org/onto/ENM_8000183,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000184,deodorizer,http://purl.enanomapper.org/onto/ENM_8000184,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000185,drier,http://purl.enanomapper.org/onto/ENM_8000185,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000186,dust suppressant,http://purl.enanomapper.org/onto/ENM_8000186,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000187,elasticizer,http://purl.enanomapper.org/onto/ENM_8000187,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000188,energy releasers,http://purl.enanomapper.org/onto/ENM_8000188,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000189,explosion inhibitor,http://purl.enanomapper.org/onto/ENM_8000189,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000190,fertilizers,http://purl.enanomapper.org/onto/ENM_8000190,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000191,film former,http://purl.enanomapper.org/onto/ENM_8000191,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000192,flow promoter,http://purl.enanomapper.org/onto/ENM_8000192,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000193,foamant,http://purl.enanomapper.org/onto/ENM_8000193,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000194,food flavouring and nutrient,http://purl.enanomapper.org/onto/ENM_8000194,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000195,freeze-thaw additive,http://purl.enanomapper.org/onto/ENM_8000195,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000196,gelling modifier,http://purl.enanomapper.org/onto/ENM_8000196,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000197,hardener,http://purl.enanomapper.org/onto/ENM_8000197,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000198,heat stabilizer,http://purl.enanomapper.org/onto/ENM_8000198,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000199,hydraulic fluids,http://purl.enanomapper.org/onto/ENM_8000199,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000200,insulators,http://purl.enanomapper.org/onto/ENM_8000200,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000201,intermediate,http://purl.enanomapper.org/onto/ENM_8000201,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000202,magnetic element,http://purl.enanomapper.org/onto/ENM_8000202,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000203,monomers,http://purl.enanomapper.org/onto/ENM_8000203,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000204,no technical function,http://purl.enanomapper.org/onto/ENM_8000204,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000205,opacifier,http://purl.enanomapper.org/onto/ENM_8000205,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000206,photochemical,http://purl.enanomapper.org/onto/ENM_8000206,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000207,process regulator,http://purl.enanomapper.org/onto/ENM_8000207,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000208,processing aid,http://purl.enanomapper.org/onto/ENM_8000208,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000209,refrigerants,http://purl.enanomapper.org/onto/ENM_8000209,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000210,resins,http://purl.enanomapper.org/onto/ENM_8000210,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000211,semiconductor and photovoltaic agent,http://purl.enanomapper.org/onto/ENM_8000211,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000212,softener,http://purl.enanomapper.org/onto/ENM_8000212,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000213,solubility enhancer,http://purl.enanomapper.org/onto/ENM_8000213,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000214,surface modifier,http://purl.enanomapper.org/onto/ENM_8000214,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000215,tackifier,http://purl.enanomapper.org/onto/ENM_8000215,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000216,terminator,http://purl.enanomapper.org/onto/ENM_8000216,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000217,UV stabilizer,http://purl.enanomapper.org/onto/ENM_8000217,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000218,vapour pressure modifiers,http://purl.enanomapper.org/onto/ENM_8000218,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000219,vehicle,http://purl.enanomapper.org/onto/ENM_8000219,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000220,viscosity modifier,http://purl.enanomapper.org/onto/ENM_8000220,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000221,X-Ray Absorber,http://purl.enanomapper.org/onto/ENM_8000221,,http://purl.obolibrary.org/obo/CHEBI_33232,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000234,poly(vinylpyrrolidone)-coated TiO2 nanoparticle,http://purl.enanomapper.org/onto/ENM_8000234,,http://purl.enanomapper.org/onto/ENM_9000099,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000239,imogolite,http://purl.enanomapper.org/onto/ENM_8000239,,http://purl.obolibrary.org/obo/CHEBI_48730,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000240,perovskite (CaTio3),http://purl.enanomapper.org/onto/ENM_8000240,,http://purl.obolibrary.org/obo/ENVO_01000508,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000245,perovskite-structured material,http://purl.enanomapper.org/onto/ENM_8000245,,http://purl.obolibrary.org/obo/ENVO_01000845,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000314,anatase nanoparticle,http://purl.enanomapper.org/onto/ENM_8000314,,http://purl.bioontology.org/ontology/npo#NPO_1486|http://purl.obolibrary.org/obo/ENVO_01000845,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000315,rutile nanoparticle,http://purl.enanomapper.org/onto/ENM_8000315,,http://purl.bioontology.org/ontology/npo#NPO_1486|http://purl.obolibrary.org/obo/ENVO_01000845,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000006,,http://purl.enanomapper.org/onto/ENM_9000006,,,http://purl.enanomapper.net/onto/ENM_9116388,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000014,metalloid nanoparticle,http://purl.enanomapper.org/onto/ENM_9000014,,http://purl.obolibrary.org/obo/CHEBI_52855,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000026,fullerenol nanoparticle,http://purl.enanomapper.org/onto/ENM_9000026,,http://purl.obolibrary.org/obo/CHEBI_33416,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000028,tricalcium phosphate nanoparticle,http://purl.enanomapper.org/onto/ENM_9000028,,http://purl.obolibrary.org/obo/CHEBI_52855,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000099,,http://purl.enanomapper.org/onto/ENM_9000099,,,http://purl.enanomapper.org/onto/ENM_8000234,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000248,,http://purl.enanomapper.org/onto/ENM_9000248,,,http://purl.enanomapper.net/onto/ENM_9116388,,,,,http://www.w3.org/2002/07/owl#Class,, diff --git a/internal-dev/templates/chemical_methods.csv b/internal-dev/templates/chemical_methods.csv new file mode 100644 index 00000000..f1d56496 --- /dev/null +++ b/internal-dev/templates/chemical_methods.csv @@ -0,0 +1,6 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +CHMO:0000538,,http://purl.obolibrary.org/obo/CHMO_0000538,,,http://purl.enanomapper.org/onto/ENM_0000108,,,,,http://www.w3.org/2002/07/owl#Class,, +CHMO:0001075,,http://purl.obolibrary.org/obo/CHMO_0001075,,,http://purl.enanomapper.org/onto/ENM_8000255|http://purl.enanomapper.org/onto/ENM_8000256,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000108,Time resolved Single Particle Inductively Coupled Plasma Mass Spectrometry,http://purl.enanomapper.org/onto/ENM_0000108,,http://purl.obolibrary.org/obo/CHMO_0000538,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000255,ICP-MS,http://purl.enanomapper.org/onto/ENM_8000255,,http://purl.obolibrary.org/obo/CHMO_0001075,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000256,CHN analysis,http://purl.enanomapper.org/onto/ENM_8000256,,http://purl.obolibrary.org/obo/CHMO_0001075,,,,,,http://www.w3.org/2002/07/owl#Class,, diff --git a/internal-dev/templates/endpoints.csv b/internal-dev/templates/endpoints.csv new file mode 100644 index 00000000..b0f6e541 --- /dev/null +++ b/internal-dev/templates/endpoints.csv @@ -0,0 +1,99 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +http://purl.bioontology.org/ontology/npo#NPO_1338,,http://purl.bioontology.org/ontology/npo#NPO_1338,,http://purl.enanomapper.org/onto/ENM_0000018,http://purl.enanomapper.org/onto/ENM_0000001|http://purl.enanomapper.org/onto/ENM_0000019|http://purl.enanomapper.org/onto/ENM_0000022|http://purl.enanomapper.org/onto/ENM_0000025|http://purl.enanomapper.org/onto/ENM_0000028|http://purl.enanomapper.org/onto/ENM_0000029|http://purl.enanomapper.org/onto/ENM_0000030|http://purl.enanomapper.org/onto/ENM_0000050,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0295914,Mitochondrial membrane potential endpoint,http://purl.enanomapper.net/onto/ENM_0295914,,http://purl.enanomapper.org/onto/ENM_0000063,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3332709,Peroxynitrite-induced luminol chemiluminiscence,http://purl.enanomapper.net/onto/ENM_3332709,,http://purl.enanomapper.org/onto/ENM_0000037,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_7011632,Cellular glutathione content,http://purl.enanomapper.net/onto/ENM_7011632,,http://purl.enanomapper.org/onto/ENM_0000037,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_8553741,nanoparticle uptake efficiency endpoint,http://purl.enanomapper.net/onto/ENM_8553741,,http://purl.enanomapper.org/onto/ENM_0000045|http://www.bioassayontology.org/bao#BAO_0002752|http://www.bioassayontology.org/bao#BAO_0080042,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000001,environmental toxicity,http://purl.enanomapper.org/onto/ENM_0000001,,http://purl.bioontology.org/ontology/npo#NPO_1338,http://purl.enanomapper.org/onto/ENM_0000002|http://purl.enanomapper.org/onto/ENM_0000003|http://purl.enanomapper.org/onto/ENM_0000007|http://purl.enanomapper.org/onto/ENM_0000009|http://purl.enanomapper.org/onto/ENM_0000012|http://purl.enanomapper.org/onto/ENM_0000014|http://purl.enanomapper.org/onto/ENM_0000015,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000002,toxicity to birds,http://purl.enanomapper.org/onto/ENM_0000002,,http://purl.enanomapper.org/onto/ENM_0000001,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000003,toxicity to earthworms,http://purl.enanomapper.org/onto/ENM_0000003,,http://purl.enanomapper.org/onto/ENM_0000001,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000004,toxicity to fish,http://purl.enanomapper.org/onto/ENM_0000004,,http://purl.enanomapper.org/onto/ENM_0000007,http://purl.enanomapper.org/onto/ENM_0000010|http://purl.enanomapper.org/onto/ENM_0000011,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000005,toxicity to aquatic algae and cyanobacteria,http://purl.enanomapper.org/onto/ENM_0000005,,http://purl.enanomapper.org/onto/ENM_0000007,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000006,toxicity to aquatic invertebrates,http://purl.enanomapper.org/onto/ENM_0000006,,http://purl.enanomapper.org/onto/ENM_0000007,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000007,aquatic environmental toxicity,http://purl.enanomapper.org/onto/ENM_0000007,,http://purl.enanomapper.org/onto/ENM_0000001,http://purl.enanomapper.org/onto/ENM_0000004|http://purl.enanomapper.org/onto/ENM_0000005|http://purl.enanomapper.org/onto/ENM_0000006,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000008,toxicity to soil microorganisms,http://purl.enanomapper.org/onto/ENM_0000008,,http://purl.enanomapper.org/onto/ENM_0000012,,http://purl.enanomapper.org/onto/ENM_0000012 and http://purl.enanomapper.org/onto/ENM_0000015,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000009,sediment toxicity,http://purl.enanomapper.org/onto/ENM_0000009,,http://purl.enanomapper.org/onto/ENM_0000001,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000010,short-term toxicity to fish,http://purl.enanomapper.org/onto/ENM_0000010,acute toxicity to fish,http://purl.enanomapper.org/onto/ENM_0000004,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000011,long-term toxicity to fish,http://purl.enanomapper.org/onto/ENM_0000011,,http://purl.enanomapper.org/onto/ENM_0000004,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000012,soil toxicity,http://purl.enanomapper.org/onto/ENM_0000012,,http://purl.enanomapper.org/onto/ENM_0000001,http://purl.enanomapper.org/onto/ENM_0000008|http://purl.enanomapper.org/onto/ENM_0000013,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000013,toxicity to soil macroorganisms,http://purl.enanomapper.org/onto/ENM_0000013,,http://purl.enanomapper.org/onto/ENM_0000012,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000014,toxicity to terrestrial organisms,http://purl.enanomapper.org/onto/ENM_0000014,,http://purl.enanomapper.org/onto/ENM_0000001,http://purl.enanomapper.org/onto/ENM_0000016|http://purl.enanomapper.org/onto/ENM_0000017,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000015,toxicity to microorganisms,http://purl.enanomapper.org/onto/ENM_0000015,,http://purl.enanomapper.org/onto/ENM_0000001,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000016,toxicity to terrestrial arthropods,http://purl.enanomapper.org/onto/ENM_0000016,,http://purl.enanomapper.org/onto/ENM_0000014,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000017,toxicity to terrestrial plants,http://purl.enanomapper.org/onto/ENM_0000017,,http://purl.enanomapper.org/onto/ENM_0000014,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000018,toxicological endpoint,http://purl.enanomapper.org/onto/ENM_0000018,,http://purl.enanomapper.org/onto/ENM_0000043,http://purl.bioontology.org/ontology/npo#NPO_1338|http://purl.enanomapper.org/onto/ENM_0000033|http://purl.enanomapper.org/onto/ENM_0000046|http://purl.enanomapper.org/onto/ENM_0000055|http://purl.enanomapper.org/onto/ENM_0000063|http://purl.enanomapper.org/onto/ENM_0000072|http://purl.enanomapper.org/onto/ENM_0000080,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000019,oral toxicity,http://purl.enanomapper.org/onto/ENM_0000019,,http://purl.bioontology.org/ontology/npo#NPO_1338,http://purl.enanomapper.org/onto/ENM_0000020|http://purl.enanomapper.org/onto/ENM_0000021,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000020,acute oral toxicity,http://purl.enanomapper.org/onto/ENM_0000020,,http://purl.enanomapper.org/onto/ENM_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000021,repeated dose oral toxicity,http://purl.enanomapper.org/onto/ENM_0000021,,http://purl.enanomapper.org/onto/ENM_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000022,inhalation toxicity,http://purl.enanomapper.org/onto/ENM_0000022,,http://purl.bioontology.org/ontology/npo#NPO_1338,http://purl.enanomapper.org/onto/ENM_0000023|http://purl.enanomapper.org/onto/ENM_0000024,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000023,acute inhalation toxicity,http://purl.enanomapper.org/onto/ENM_0000023,,http://purl.enanomapper.org/onto/ENM_0000022,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000024,repeated dose inhalation toxicity,http://purl.enanomapper.org/onto/ENM_0000024,,http://purl.enanomapper.org/onto/ENM_0000022,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000025,dermal toxicity,http://purl.enanomapper.org/onto/ENM_0000025,,http://purl.bioontology.org/ontology/npo#NPO_1338,http://purl.enanomapper.org/onto/ENM_0000026|http://purl.enanomapper.org/onto/ENM_0000027|http://purl.enanomapper.org/onto/ENM_0000032|http://purl.enanomapper.org/onto/ENM_0000034,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000026,acute dermal toxicity,http://purl.enanomapper.org/onto/ENM_0000026,,http://purl.enanomapper.org/onto/ENM_0000025,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000027,repeated dose dermal toxicity,http://purl.enanomapper.org/onto/ENM_0000027,,http://purl.enanomapper.org/onto/ENM_0000025,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000028,genetic toxicity,http://purl.enanomapper.org/onto/ENM_0000028,genotoxicity,http://purl.bioontology.org/ontology/npo#NPO_1338,http://purl.enanomapper.org/onto/ENM_0000039,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000029,carcinogenicity,http://purl.enanomapper.org/onto/ENM_0000029,,http://purl.bioontology.org/ontology/npo#NPO_1338,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000030,reproductive toxicity,http://purl.enanomapper.org/onto/ENM_0000030,,http://purl.bioontology.org/ontology/npo#NPO_1338,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000031,teratogenicity,http://purl.enanomapper.org/onto/ENM_0000031,pre-natal developmental toxicity,http://purl.enanomapper.org/onto/ENM_0000050,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000032,skin irritation,http://purl.enanomapper.org/onto/ENM_0000032,skin corrosion,http://purl.enanomapper.org/onto/ENM_0000025,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000033,eye irritation,http://purl.enanomapper.org/onto/ENM_0000033,eye corrosion,http://purl.enanomapper.org/onto/ENM_0000018,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000034,skin sensitization,http://purl.enanomapper.org/onto/ENM_0000034,skin sensitisation,http://purl.enanomapper.org/onto/ENM_0000025,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000035,physchem property endpoint,http://purl.enanomapper.org/onto/ENM_0000035,,http://www.bioassayontology.org/bao#BAO_0000179,http://purl.enanomapper.org/onto/ENM_0000047|http://www.bioassayontology.org/bao#BAO_0002128,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000036,Pro-inflammatory response,http://purl.enanomapper.org/onto/ENM_0000036,,http://www.bioassayontology.org/bao#BAO_0000181,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000037,Oxidative stress,http://purl.enanomapper.org/onto/ENM_0000037,,http://purl.enanomapper.org/onto/ENM_0000043,http://purl.enanomapper.net/onto/ENM_3332709|http://purl.enanomapper.net/onto/ENM_7011632,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000038,Uptake,http://purl.enanomapper.org/onto/ENM_0000038,,http://www.bioassayontology.org/bao#BAO_0000179,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000039,genotoxicity,http://purl.enanomapper.org/onto/ENM_0000039,,http://purl.enanomapper.org/onto/ENM_0000028,http://purl.enanomapper.org/onto/ENM_0000040|http://purl.enanomapper.org/onto/ENM_0000041|http://purl.enanomapper.org/onto/ENM_0000042,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000040,single and double strand breaks,http://purl.enanomapper.org/onto/ENM_0000040,,http://purl.enanomapper.org/onto/ENM_0000039,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000041,base DNA damage,http://purl.enanomapper.org/onto/ENM_0000041,,http://purl.enanomapper.org/onto/ENM_0000039,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000042,mutagenicity,http://purl.enanomapper.org/onto/ENM_0000042,,http://purl.enanomapper.org/onto/ENM_0000039,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000043,Biological property endpoint,http://purl.enanomapper.org/onto/ENM_0000043,,http://www.bioassayontology.org/bao#BAO_0000179,http://purl.enanomapper.org/onto/ENM_0000018|http://purl.enanomapper.org/onto/ENM_0000037|http://purl.enanomapper.org/onto/ENM_0000044|http://purl.enanomapper.org/onto/ENM_0000045|http://purl.enanomapper.org/onto/ENM_0000061|http://purl.enanomapper.org/onto/ENM_0000067|http://purl.enanomapper.org/onto/ENM_0000068|http://purl.enanomapper.org/onto/ENM_0000071|http://purl.enanomapper.org/onto/ENM_0000076|http://purl.enanomapper.org/onto/ENM_0000079,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000044,Barrier integrity,http://purl.enanomapper.org/onto/ENM_0000044,,http://purl.enanomapper.org/onto/ENM_0000043,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000045,Transport of NPs across barrier,http://purl.enanomapper.org/onto/ENM_0000045,,http://purl.enanomapper.org/onto/ENM_0000043,http://purl.enanomapper.net/onto/ENM_8553741,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000046,Immunotoxicity,http://purl.enanomapper.org/onto/ENM_0000046,immunotox,http://purl.enanomapper.org/onto/ENM_0000018,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000047,chemical property endpoint,http://purl.enanomapper.org/onto/ENM_0000047,,http://purl.enanomapper.org/onto/ENM_0000035,http://purl.enanomapper.org/onto/ENM_0000082|http://purl.enanomapper.org/onto/ENM_0000083|http://purl.enanomapper.org/onto/ENM_0000089|http://purl.enanomapper.org/onto/ENM_0000090,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000050,developmental toxicity,http://purl.enanomapper.org/onto/ENM_0000050,,http://purl.bioontology.org/ontology/npo#NPO_1338,http://purl.enanomapper.org/onto/ENM_0000031,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000051,EC10,http://purl.enanomapper.org/onto/ENM_0000051,,http://www.bioassayontology.org/bao#BAO_0002162,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000052,EC20,http://purl.enanomapper.org/onto/ENM_0000052,,http://www.bioassayontology.org/bao#BAO_0002162,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000053,EC80,http://purl.enanomapper.org/onto/ENM_0000053,,http://www.bioassayontology.org/bao#BAO_0002162,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000054,EC90,http://purl.enanomapper.org/onto/ENM_0000054,,http://www.bioassayontology.org/bao#BAO_0002162,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000055,RD50,http://purl.enanomapper.org/onto/ENM_0000055,,http://purl.enanomapper.org/onto/ENM_0000018|http://www.bioassayontology.org/bao#BAO_0002162,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000056,NOEL,http://purl.enanomapper.org/onto/ENM_0000056,no observed effect level. ,http://www.bioassayontology.org/bao#BAO_0000181,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000057,NOAEL,http://purl.enanomapper.org/onto/ENM_0000057,no observed adverse effect level,http://www.bioassayontology.org/bao#BAO_0000181,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000058,LOAEL,http://purl.enanomapper.org/onto/ENM_0000058,lowest observed adverse effect level,http://www.bioassayontology.org/bao#BAO_0000181,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000059,LOEL,http://purl.enanomapper.org/onto/ENM_0000059,lowest observed effect level,http://www.bioassayontology.org/bao#BAO_0000181,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000060,NOEC,http://purl.enanomapper.org/onto/ENM_0000060,no observed effect concentration,http://www.bioassayontology.org/bao#BAO_0002162,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000061,barrier crossing,http://purl.enanomapper.org/onto/ENM_0000061,,http://purl.enanomapper.org/onto/ENM_0000043,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000062,Cell Transformation Assay,http://purl.enanomapper.org/onto/ENM_0000062,Cell Transformation Assay,http://www.bioassayontology.org/bao#BAO_0002128,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000063,cytotoxicity endpoint,http://purl.enanomapper.org/onto/ENM_0000063,,http://purl.enanomapper.org/onto/ENM_0000018,http://purl.enanomapper.net/onto/ENM_0295914,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000066,nm deposition,http://purl.enanomapper.org/onto/ENM_0000066,,http://www.bioassayontology.org/bao#BAO_0002128,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000067,occular irritaton,http://purl.enanomapper.org/onto/ENM_0000067,,http://purl.enanomapper.org/onto/ENM_0000043,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000068,viability,http://purl.enanomapper.org/onto/ENM_0000068,,http://purl.enanomapper.org/onto/ENM_0000043,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000069,Air liquid interface,http://purl.enanomapper.org/onto/ENM_0000069,,http://www.bioassayontology.org/bao#BAO_0002128,,,,,,http://www.w3.org/2002/07/owl#Class,, 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+http://purl.bioontology.org/ontology/npo#NPO_1699,,http://purl.bioontology.org/ontology/npo#NPO_1699,,,http://purl.enanomapper.org/onto/ENM_9000101|http://purl.enanomapper.org/onto/ENM_9000102|http://purl.enanomapper.org/onto/ENM_9000103|http://purl.enanomapper.org/onto/ENM_9000104|http://purl.enanomapper.org/onto/ENM_9000105|http://purl.enanomapper.org/onto/ENM_9000106|http://purl.enanomapper.org/onto/ENM_9000107|http://purl.enanomapper.org/onto/ENM_9000108|http://purl.enanomapper.org/onto/ENM_9000109|http://purl.enanomapper.org/onto/ENM_9000110|http://purl.enanomapper.org/onto/ENM_9000111|http://purl.enanomapper.org/onto/ENM_9000112|http://purl.enanomapper.org/onto/ENM_9000113|http://purl.enanomapper.org/onto/ENM_9000114|http://purl.enanomapper.org/onto/ENM_9000115|http://purl.enanomapper.org/onto/ENM_9000116|http://purl.enanomapper.org/onto/ENM_9000117|http://purl.enanomapper.org/onto/ENM_9000118|http://purl.enanomapper.org/onto/ENM_9000119|http://purl.enanomapper.org/onto/ENM_9000120|http://purl.enanomapper.org/onto/ENM_9000121|http://purl.enanomapper.org/onto/ENM_9000122|http://purl.enanomapper.org/onto/ENM_9000123|http://purl.enanomapper.org/onto/ENM_9000124|http://purl.enanomapper.org/onto/ENM_9000125|http://purl.enanomapper.org/onto/ENM_9000126|http://purl.enanomapper.org/onto/ENM_9000127|http://purl.enanomapper.org/onto/ENM_9000128|http://purl.enanomapper.org/onto/ENM_9000129|http://purl.enanomapper.org/onto/ENM_9000130|http://purl.enanomapper.org/onto/ENM_9000131|http://purl.enanomapper.org/onto/ENM_9000132|http://purl.enanomapper.org/onto/ENM_9000133|http://purl.enanomapper.org/onto/ENM_9000134|http://purl.enanomapper.org/onto/ENM_9000135|http://purl.enanomapper.org/onto/ENM_9000136|http://purl.enanomapper.org/onto/ENM_9000137|http://purl.enanomapper.org/onto/ENM_9000138|http://purl.enanomapper.org/onto/ENM_9000139|http://purl.enanomapper.org/onto/ENM_9000140|http://purl.enanomapper.org/onto/ENM_9000141|http://purl.enanomapper.org/onto/ENM_9000142|http://purl.enanomapper.org/onto/ENM_9000143|http://purl.enanomapper.org/onto/ENM_9000144|http://purl.enanomapper.org/onto/ENM_9000145|http://purl.enanomapper.org/onto/ENM_9000146|http://purl.enanomapper.org/onto/ENM_9000147|http://purl.enanomapper.org/onto/ENM_9000148|http://purl.enanomapper.org/onto/ENM_9000149|http://purl.enanomapper.org/onto/ENM_9000150|http://purl.enanomapper.org/onto/ENM_9000151|http://purl.enanomapper.org/onto/ENM_9000152|http://purl.enanomapper.org/onto/ENM_9000153|http://purl.enanomapper.org/onto/ENM_9000154|http://purl.enanomapper.org/onto/ENM_9000155|http://purl.enanomapper.org/onto/ENM_9000156|http://purl.enanomapper.org/onto/ENM_9000157|http://purl.enanomapper.org/onto/ENM_9000158|http://purl.enanomapper.org/onto/ENM_9000159|http://purl.enanomapper.org/onto/ENM_9000160|http://purl.enanomapper.org/onto/ENM_9000161|http://purl.enanomapper.org/onto/ENM_9000162|http://purl.enanomapper.org/onto/ENM_9000163|http://purl.enanomapper.org/onto/ENM_9000164|http://purl.enanomapper.org/onto/ENM_9000165|http://purl.enanomapper.org/onto/ENM_9000166|http://purl.enanomapper.org/onto/ENM_9000167|http://purl.enanomapper.org/onto/ENM_9000168|http://purl.enanomapper.org/onto/ENM_9000169|http://purl.enanomapper.org/onto/ENM_9000170|http://purl.enanomapper.org/onto/ENM_9000171|http://purl.enanomapper.org/onto/ENM_9000172|http://purl.enanomapper.org/onto/ENM_9000173|http://purl.enanomapper.org/onto/ENM_9000174|http://purl.enanomapper.org/onto/ENM_9000175|http://purl.enanomapper.org/onto/ENM_9000176|http://purl.enanomapper.org/onto/ENM_9000177|http://purl.enanomapper.org/onto/ENM_9000178|http://purl.enanomapper.org/onto/ENM_9000179|http://purl.enanomapper.org/onto/ENM_9000180|http://purl.enanomapper.org/onto/ENM_9000181|http://purl.enanomapper.org/onto/ENM_9000182|http://purl.enanomapper.org/onto/ENM_9000183|http://purl.enanomapper.org/onto/ENM_9000184|http://purl.enanomapper.org/onto/ENM_9000185|http://purl.enanomapper.org/onto/ENM_9000186|http://purl.enanomapper.org/onto/ENM_9000187|http://purl.enanomapper.org/onto/ENM_9000188|http://purl.enanomapper.org/onto/ENM_9000189|http://purl.enanomapper.org/onto/ENM_9000190|http://purl.enanomapper.org/onto/ENM_9000191|http://purl.enanomapper.org/onto/ENM_9000192|http://purl.enanomapper.org/onto/ENM_9000193|http://purl.enanomapper.org/onto/ENM_9000194|http://purl.enanomapper.org/onto/ENM_9000195|http://purl.enanomapper.org/onto/ENM_9000196|http://purl.enanomapper.org/onto/ENM_9000197|http://purl.enanomapper.org/onto/ENM_9000198|http://purl.enanomapper.org/onto/ENM_9000199,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_1817,,http://purl.bioontology.org/ontology/npo#NPO_1817,,,http://purl.enanomapper.org/onto/ENM_9000010,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_1883,,http://purl.bioontology.org/ontology/npo#NPO_1883,,,http://purl.enanomapper.net/onto/ENM_0468307|http://purl.enanomapper.net/onto/ENM_0468309|http://purl.enanomapper.net/onto/ENM_2458273|http://purl.enanomapper.net/onto/ENM_6674110|http://purl.enanomapper.net/onto/ENM_7609815|http://purl.enanomapper.net/onto/ENM_9318045,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_1892,,http://purl.bioontology.org/ontology/npo#NPO_1892,,,http://purl.enanomapper.org/onto/ENM_9000235|http://purl.enanomapper.org/onto/ENM_9000236|http://purl.enanomapper.org/onto/ENM_9000255,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_1897,,http://purl.bioontology.org/ontology/npo#NPO_1897,,,http://purl.enanomapper.org/onto/ENM_9000001|http://purl.enanomapper.org/onto/ENM_9000002,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_1910,,http://purl.bioontology.org/ontology/npo#NPO_1910,,,http://purl.enanomapper.org/onto/ENM_8000305,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_1945,,http://purl.bioontology.org/ontology/npo#NPO_1945,,,http://purl.enanomapper.net/onto/ENM_3079648|http://purl.enanomapper.net/onto/ENM_9010524,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_1964,,http://purl.bioontology.org/ontology/npo#NPO_1964,,,http://purl.enanomapper.net/onto/ENM_0298514,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_1999,,http://purl.bioontology.org/ontology/npo#NPO_1999,,,http://purl.enanomapper.org/onto/ENM_0000102,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_354,,http://purl.bioontology.org/ontology/npo#NPO_354,,,http://purl.enanomapper.org/onto/ENM_9000080|http://purl.enanomapper.org/onto/ENM_9000081|http://purl.enanomapper.org/onto/ENM_9000206|http://purl.enanomapper.org/onto/ENM_9000207|http://purl.enanomapper.org/onto/ENM_9000216|http://purl.enanomapper.org/onto/ENM_9000217|http://purl.enanomapper.org/onto/ENM_9000218|http://purl.enanomapper.org/onto/ENM_9000219|http://purl.enanomapper.org/onto/ENM_9000220|http://purl.enanomapper.org/onto/ENM_9000221|http://purl.enanomapper.org/onto/ENM_9000222|http://purl.enanomapper.org/onto/ENM_9000223|http://purl.enanomapper.org/onto/ENM_9000224|http://purl.enanomapper.org/onto/ENM_9000225|http://purl.enanomapper.org/onto/ENM_9000229|http://purl.enanomapper.org/onto/ENM_9000230|http://purl.enanomapper.org/onto/ENM_9000239,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_401,,http://purl.bioontology.org/ontology/npo#NPO_401,,,http://purl.enanomapper.org/onto/ENM_9000097|http://purl.enanomapper.org/onto/ENM_9000098|http://purl.enanomapper.org/onto/ENM_9000216|http://purl.enanomapper.org/onto/ENM_9000217,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#NPO_707,,http://purl.bioontology.org/ontology/npo#NPO_707,,,http://purl.enanomapper.org/onto/ENM_0000117|http://purl.enanomapper.org/onto/ENM_9000007|http://purl.enanomapper.org/onto/ENM_9000008|http://purl.enanomapper.org/onto/ENM_9000240|http://purl.enanomapper.org/onto/ENM_9000246|http://purl.enanomapper.org/onto/ENM_9000249|http://purl.enanomapper.org/onto/ENM_9000256|http://purl.enanomapper.org/onto/ENM_9000257,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0218062,TiO2@SiO2 nanocomposite,http://purl.enanomapper.net/onto/ENM_0218062,,http://purl.bioontology.org/ontology/npo#NPO_1373|http://purl.bioontology.org/ontology/npo#NPO_1486|http://purl.obolibrary.org/obo/NCIT_C62365,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0298514,Ion leakage,http://purl.enanomapper.net/onto/ENM_0298514,,http://purl.bioontology.org/ontology/npo#NPO_1964,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0468307,Carboxy-functionalization of a nanoparticle,http://purl.enanomapper.net/onto/ENM_0468307,,http://purl.bioontology.org/ontology/npo#NPO_1883,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0468309,Glucose-functionalization of a nanoparticle,http://purl.enanomapper.net/onto/ENM_0468309,,http://purl.bioontology.org/ontology/npo#NPO_1883,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0986725,AlOOH nanoparticle,http://purl.enanomapper.net/onto/ENM_0986725,,http://purl.enanomapper.org/onto/ENM_9000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_2012430,BET surface area assay,http://purl.enanomapper.net/onto/ENM_2012430,,http://purl.enanomapper.net/onto/ENM_3323767|http://www.bioassayontology.org/bao#BAO_0000208 some http://purl.enanomapper.net/onto/ENM_5933788,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_2012431,Phase transition,http://purl.enanomapper.net/onto/ENM_2012431,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_2012432,anatase to rutile phase transformation,http://purl.enanomapper.net/onto/ENM_2012432,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_2458273,Epoxy-functionalization of a nanoparticle,http://purl.enanomapper.net/onto/ENM_2458273,,http://purl.bioontology.org/ontology/npo#NPO_1883,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3079648,Exfoliation,http://purl.enanomapper.net/onto/ENM_3079648,,http://purl.bioontology.org/ontology/npo#NPO_1945,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3323767,Surface area assay,http://purl.enanomapper.net/onto/ENM_3323767,,http://purl.obolibrary.org/obo/OBI_0000070|http://www.bioassayontology.org/bao#BAO_0000208 some http://semanticscience.org/resource/CHEMINF_000247,http://purl.enanomapper.net/onto/ENM_2012430,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3733911,Nanoparticle material part consisting of a silica coat,http://purl.enanomapper.net/onto/ENM_3733911,,http://purl.bioontology.org/ontology/npo#NPO_1367,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5933788,,http://purl.enanomapper.net/onto/ENM_5933788,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_6674110,Hydroxy-functionalization of a nanoparticle,http://purl.enanomapper.net/onto/ENM_6674110,,http://purl.bioontology.org/ontology/npo#NPO_1883,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_6691787,CeZrO2 nanoparticle,http://purl.enanomapper.net/onto/ENM_6691787,,http://purl.enanomapper.org/onto/ENM_9000006|http://purl.enanomapper.org/onto/ENM_9000241,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_7609815,Amino-functionalization of a nanoparticle,http://purl.enanomapper.net/onto/ENM_7609815,,http://purl.bioontology.org/ontology/npo#NPO_1883,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_7849436,Electrostatic stability,http://purl.enanomapper.net/onto/ENM_7849436,,http://purl.obolibrary.org/obo/NCIT_C54072,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9010524,Embedding into nano-enabled paint formulation,http://purl.enanomapper.net/onto/ENM_9010524,,http://purl.bioontology.org/ontology/npo#NPO_1945,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9318045,Carbon-carbon-functionalization of a nanoparticle,http://purl.enanomapper.net/onto/ENM_9318045,,http://purl.bioontology.org/ontology/npo#NPO_1883,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9769969,eco-corona,http://purl.enanomapper.net/onto/ENM_9769969,,http://purl.enanomapper.org/onto/ENM_0000115,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9915100,Crystalline state stability,http://purl.enanomapper.net/onto/ENM_9915100,,http://purl.obolibrary.org/obo/NCIT_C54072,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto//ENM_0000074,Mastersizer,http://purl.enanomapper.org/onto//ENM_0000074,,http://purl.bioontology.org/ontology/npo#NPO_1436,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto//ENM_0000075,Malvern Zetasizer,http://purl.enanomapper.org/onto//ENM_0000075,,http://purl.bioontology.org/ontology/npo#NPO_1436,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000064,Brunauer–Emmett–Teller analysis,http://purl.enanomapper.org/onto/ENM_0000064,,http://purl.bioontology.org/ontology/npo#NPO_1405,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000065,Nanoparticle Tracking Analysis,http://purl.enanomapper.org/onto/ENM_0000065,,http://purl.bioontology.org/ontology/npo#NPO_1405,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000100,force tensiometry,http://purl.enanomapper.org/onto/ENM_0000100,,http://purl.bioontology.org/ontology/npo#NPO_1405,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000102,disc centrifuge,http://purl.enanomapper.org/onto/ENM_0000102,,http://purl.bioontology.org/ontology/npo#NPO_1999,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000109,Time resolved nanoparticle tracking analysis,http://purl.enanomapper.org/onto/ENM_0000109,,http://purl.bioontology.org/ontology/npo#NPO_1405,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000115,protein corona,http://purl.enanomapper.org/onto/ENM_0000115,,http://purl.bioontology.org/ontology/npo#NPO_1597,http://purl.enanomapper.net/onto/ENM_9769969,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000117,graphene oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_0000117,,http://purl.bioontology.org/ontology/npo#NPO_707,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_132889),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000118,cobalt oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_0000118,,http://purl.enanomapper.org/onto/ENM_0000119,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000119,cobalt oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_0000119,,http://purl.bioontology.org/ontology/npo#NPO_1541,http://purl.enanomapper.org/onto/ENM_0000118|http://purl.enanomapper.org/onto/ENM_9000254,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000120,yttrium oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_0000120,,http://purl.bioontology.org/ontology/npo#NPO_1541,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000121,lanthanum oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_0000121,,http://purl.bioontology.org/ontology/npo#NPO_1541,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000122,neodymium oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_0000122,,http://purl.bioontology.org/ontology/npo#NPO_1541,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000123,samarium oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_0000123,,http://purl.bioontology.org/ontology/npo#NPO_1541,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000124,gadolinium oxide 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+http://purl.enanomapper.org/onto/ENM_9000231,JRCNM10200a,http://purl.enanomapper.org/onto/ENM_9000231,,http://purl.bioontology.org/ontology/npo#NPO_1486,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000232,JRCNM10202a,http://purl.enanomapper.org/onto/ENM_9000232,,http://purl.bioontology.org/ontology/npo#NPO_1486,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000233,NM-600,http://purl.enanomapper.org/onto/ENM_9000233,,http://purl.enanomapper.org/onto/ENM_9000007,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000234,JRCNM06000a,http://purl.enanomapper.org/onto/ENM_9000234,,http://purl.enanomapper.org/onto/ENM_9000007,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000235,NM-300,http://purl.enanomapper.org/onto/ENM_9000235,,http://purl.bioontology.org/ontology/npo#NPO_1892,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000236,NM-300K,http://purl.enanomapper.org/onto/ENM_9000236,,http://purl.bioontology.org/ontology/npo#NPO_1892,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000237,JRCNM02101a,http://purl.enanomapper.org/onto/ENM_9000237,,http://purl.enanomapper.org/onto/ENM_9000006,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000238,JRCNM02102a,http://purl.enanomapper.org/onto/ENM_9000238,,http://purl.enanomapper.org/onto/ENM_9000006,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000239,Mitsui MWCNT-7,http://purl.enanomapper.org/onto/ENM_9000239,,http://purl.bioontology.org/ontology/npo#NPO_354,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000240,NM-220,http://purl.enanomapper.org/onto/ENM_9000240,,http://purl.bioontology.org/ontology/npo#NPO_707,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_133326),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000241,zirconium (IV) dioxide nanoparticle,http://purl.enanomapper.org/onto/ENM_9000241,,http://purl.bioontology.org/ontology/npo#NPO_1541,http://purl.enanomapper.net/onto/ENM_6691787,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000242,doped core,http://purl.enanomapper.org/onto/ENM_9000242,,http://purl.bioontology.org/ontology/npo#NPO_1617,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000243,cellulose nanocrystal,http://purl.enanomapper.org/onto/ENM_9000243,,http://purl.bioontology.org/ontology/npo#NPO_1375,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000244,selenium nanoparticle,http://purl.enanomapper.org/onto/ENM_9000244,,http://purl.bioontology.org/ontology/npo#NPO_1384,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_26628),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000245,titanium nanoparticle,http://purl.enanomapper.org/onto/ENM_9000245,,http://purl.bioontology.org/ontology/npo#NPO_1384,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_37217),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000246,copper sulfide nanoparticle,http://purl.enanomapper.org/onto/ENM_9000246,,http://purl.bioontology.org/ontology/npo#NPO_707,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000247,bismuth nanoparticle,http://purl.enanomapper.org/onto/ENM_9000247,,http://purl.bioontology.org/ontology/npo#NPO_1384,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_37196),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000248,cobalt nanoparticle,http://purl.enanomapper.org/onto/ENM_9000248,,http://purl.bioontology.org/ontology/npo#NPO_1384,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_33888),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000249,PLGA nanoparticle,http://purl.enanomapper.org/onto/ENM_9000249,,http://purl.bioontology.org/ontology/npo#NPO_707,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_53374),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000250,cadmium oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_9000250,,http://purl.bioontology.org/ontology/npo#NPO_1541,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000251,manganese oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_9000251,,http://purl.bioontology.org/ontology/npo#NPO_1541,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000252,magnesium oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_9000252,,http://purl.bioontology.org/ontology/npo#NPO_1541,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_25108),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000253,molybdenum nanoparticle,http://purl.enanomapper.org/onto/ENM_9000253,,http://purl.bioontology.org/ontology/npo#NPO_1384,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_25370),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000254,cobalt oxide nanoparticle,http://purl.enanomapper.org/onto/ENM_9000254,,http://purl.enanomapper.org/onto/ENM_0000119,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000255,JRCNM03000a,http://purl.enanomapper.org/onto/ENM_9000255,,http://purl.bioontology.org/ontology/npo#NPO_1892,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000256,JRCNM50001a,http://purl.enanomapper.org/onto/ENM_9000256,,http://purl.bioontology.org/ontology/npo#NPO_707,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000257,tungsten carbide nanoparticle,http://purl.enanomapper.org/onto/ENM_9000257,,http://purl.bioontology.org/ontology/npo#NPO_707,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_82283),,,,http://www.w3.org/2002/07/owl#Class,, +http://semanticscience.org/resource/CHEMINF_000247,,http://semanticscience.org/resource/CHEMINF_000247,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0002775,aqueous solubility,http://www.bioassayontology.org/bao#BAO_0002775,,http://purl.enanomapper.org/onto/ENM_9000072,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0003009,BAO_0003009,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,,,http://www.w3.org/2002/07/owl#Class,, diff --git a/internal-dev/templates/experimental_factors.csv b/internal-dev/templates/experimental_factors.csv new file mode 100644 index 00000000..e22ade1c --- /dev/null +++ b/internal-dev/templates/experimental_factors.csv @@ -0,0 +1,15 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +BTO:0000018,,http://purl.obolibrary.org/obo/BTO_0000018,,http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C119826,,http://purl.obolibrary.org/obo/NCIT_C119826,,,http://purl.enanomapper.org/onto/ENM_9000267,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C14225,,http://purl.obolibrary.org/obo/NCIT_C14225,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C14238,,http://purl.obolibrary.org/obo/NCIT_C14238,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C160998,,http://purl.obolibrary.org/obo/NCIT_C160998,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C53414,,http://purl.obolibrary.org/obo/NCIT_C53414,,,http://purl.enanomapper.net/onto/ENM_2169340,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_2169340,Organic matter in medium,http://purl.enanomapper.net/onto/ENM_2169340,,http://purl.obolibrary.org/obo/NCIT_C53414,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000267,Pulmonary instillation,http://purl.enanomapper.org/onto/ENM_9000267,,http://purl.obolibrary.org/obo/NCIT_C119826,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0001089,,http://www.ebi.ac.uk/efo/EFO_0001089,,http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0001193,,http://www.ebi.ac.uk/efo/EFO_0001193,,http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0002779,,http://www.ebi.ac.uk/efo/EFO_0002779,,http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0002887,,http://www.ebi.ac.uk/efo/EFO_0002887,,http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C14238,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0002888,,http://www.ebi.ac.uk/efo/EFO_0002888,,http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C14225,http://purl.obolibrary.org/obo/BTO_0000018|http://www.ebi.ac.uk/efo/EFO_0001089|http://www.ebi.ac.uk/efo/EFO_0001193|http://www.ebi.ac.uk/efo/EFO_0002779,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.ebi.ac.uk/efo/EFO_0002936,,http://www.ebi.ac.uk/efo/EFO_0002936,,http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C160998,,,,,,http://www.w3.org/2002/07/owl#Class,, diff --git a/internal-dev/templates/pchem.csv b/internal-dev/templates/pchem.csv new file mode 100644 index 00000000..a6c9c840 --- /dev/null +++ b/internal-dev/templates/pchem.csv @@ -0,0 +1,10 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +BFO:0000015,,http://purl.obolibrary.org/obo/BFO_0000015,,,http://purl.enanomapper.org/onto/ENM_0000114,,,,,http://www.w3.org/2002/07/owl#Class,, +BFO:0000019,,http://purl.obolibrary.org/obo/BFO_0000019,,,http://purl.enanomapper.org/onto/ENM_0000101|http://purl.enanomapper.org/onto/ENM_0000103|http://purl.enanomapper.org/onto/ENM_0000107|http://purl.enanomapper.org/onto/ENM_9000003|http://purl.enanomapper.org/onto/ENM_9000004|http://purl.enanomapper.org/onto/ENM_9000100,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000101,redox speciation,http://purl.enanomapper.org/onto/ENM_0000101,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000103,osmotic concentration,http://purl.enanomapper.org/onto/ENM_0000103,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000107,Preferential orientation,http://purl.enanomapper.org/onto/ENM_0000107,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000114,Speciation,http://purl.enanomapper.org/onto/ENM_0000114,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000003,dustiness,http://purl.enanomapper.org/onto/ENM_9000003,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000004,pour density,http://purl.enanomapper.org/onto/ENM_9000004,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000100,boiling point,http://purl.enanomapper.org/onto/ENM_9000100,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, diff --git a/scripts/src/internal_terms_update.sh b/scripts/src/internal_terms_update.sh new file mode 100644 index 00000000..2d382b8e --- /dev/null +++ b/scripts/src/internal_terms_update.sh @@ -0,0 +1,114 @@ +ROBOT="https://github.com/ontodev/robot/raw/master/bin/robot" +ROBOT_JAR="https://github.com/ontodev/robot/releases/download/v1.9.5/robot.jar" +# Download ROBOT +wget -nc $ROBOT +wget -nc $ROBOT_JAR +# Export eNMO v10.0 internal terms to tabular format +# Assays +sh robot \ + export --input internal-dev/bao-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/bioassay.csv \ + --entity-format IRI + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# Endpoints +sh robot \ + export --input internal-dev/endpoints.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/endpoints.csv \ + --entity-format IRI +# Chemical entities +sh robot \ + export --input internal-dev/chebi-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/chemical_entities.csv \ + --entity-format IRI + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice +# ENMs +sh robot \ + export --input internal-dev/npo-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/enms.csv \ + --entity-format IRI + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# PChem +sh robot \ + export --input internal-dev/bfo-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/pchem.csv \ + --entity-format IRI + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# Methods +sh robot \ + export --input internal-dev/chmo-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/chemical_methods.csv \ + --entity-format IRI + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# Experimental factors +sh robot \ + export --input internal-dev/efo-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/experimental_factors.csv \ + --entity-format IRI + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# Biological process +sh robot \ + export --input internal-dev/go-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/biological_process.csv \ + --entity-format IRI + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + + +# Experimental factors +sh robot \ + export --input internal-dev/efo-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/experimental_factors.csv \ + --entity-format IRI + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# IAO +## TODO Divide classes according to type (assay, endpoint, method, attribute) + +# NCIT +sh robot \ + export --input internal-dev/ncit-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/cell_line.csv \ + --entity-format IRI + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + + +# Regulation, guidance, governance + + +# NanoQSAR +## TODO decide whether to separate development of nanoQSAR ontology or incorporate into CHEMINF + +# CHEMINF +## TODO add classes to upstream ontology CHEMINF \ No newline at end of file From 74801dccd9ccc92e80edb59e057559a2b97a9940 Mon Sep 17 00:00:00 2001 From: Javier Date: Tue, 16 Jul 2024 15:38:00 +0200 Subject: [PATCH 2/3] Some fixes --- internal-dev/descriptors/nm.owl | 308 +++++++++++++++++++++++++++++++- 1 file changed, 306 insertions(+), 2 deletions(-) diff --git a/internal-dev/descriptors/nm.owl b/internal-dev/descriptors/nm.owl index f43ece15..ea885bb4 100644 --- a/internal-dev/descriptors/nm.owl +++ b/internal-dev/descriptors/nm.owl @@ -44,6 +44,7 @@ xmlns:CHEBI="&obo;CHEBI#" xmlns:OBO_REL="http://purl.org/obo/owl/OBO_REL#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#" + xmlns:enm="http://purl.enanomapper.org/onto/" xmlns:span="http://www.ifomis.org/bfo/1.1/span#"> @@ -54,9 +55,9 @@ en http://creativecommons.org/licenses/by/3.0 - + @@ -340,5 +341,308 @@ at least 20-30 nm. + + + + Descriptors that have been obtained through modelling. + predicted descriptors + + + + + + + Descriptors that have been obtained through modelling. + calculated descriptors + + + + + + + A class of descriptors derived using CDK, the Chemistry Development Kit. + cdk descriptors + + + + + + + average size + + + + + + + The molecular descriptor is the final result of a logic and mathematical procedure which transforms chemical information encoded within a symbolic representation of a molecule into a useful number or the result of some standardized experiment. https://en.wikipedia.org/wiki/Molecular_descriptor + descriptor + + + + + + + + A class of descriptors derived by Image analysis methodologies, developed within the eNanoMapper project. https://www.enanomapper.net/deliverables/d4/150801_eNanoMapper-D4_2final.pdf + image analysis descriptors + + + + + + + Descriptors derived from quantum mechanical calculations. + quantum mechanical descriptor + + + + + + + Descriptors derived from biological information (partially or fully). + biological descriptor + + + + + + + Size of the core. + core size + + + + + + + The longest distance between any two points along the selection boundary, also known as maximum caliper. https://imagej.nih.gov/ij/docs/guide/146-30.html + feret diameter + + + + + + + Calculates and displays two values: "IntDen" (the product of Area and Mean Grey Value) and "RawIntDen" (the sum of the pixel values in the image or selection). "IntDen" and "RawIntDen" values are the same for uncalibrated image. doi: 10.3109/17435390.2014.930195 + integrated density + + + + + + + The fourth order moment about the mean. doi: 10.3109/17435390.2014.930195 + kurtosis + + + + + + + + Average grey value within the selection. In this value the sum of all pixels within the selection is divided by the count of pixels. If the image is not in grey scale then a transformation is made according to the following formula: grey=0.299red+0.587green+0.114blue. http://www.enanomapper.net/deliverables/d4/150801_eNanoMapper-D4_2final.pdf + mean grey value + + + + + + + The median value of the pixels in the image or selection. + median + + + + + + + + + The lowest grey scale values appearing in the selection. + min grey levels + + + + + + + + + The highest grey scale values appearing in the selection. + max grey levels + + + + + + + + + Stands for the most frequently occurring grey value within the selection. + modal grey value + + + + + + + + + The size of the particle as measured when in a specific media. + particle size in media + + + + + + + + + The sum of the relative differences in intensities between values of neighboring pixels (xi and yi) along the X axis. + porosity x + + + + + + + + + The sum of the relative differences in intensities between values of neighboring pixels (xi and yi) along the Y axis. + porosity y + + + + + + + + + The inverse of Aspect Ratio, or 4 ×[Area]/π × [Major axis]2. https://imagej.nih.gov/ij/docs/guide/146-30.html + roundness + + + + + + + + + This is a group of descriptors (Circularity, Aspect Ratio, Roundness and Solidity) that are all calculated when the "Shape descriptors" option is used. http://www.enanomapper.net/deliverables/d4/150801_eNanoMapper-D4_2final.pdf + shape descriptors + + + + + + + + + A measure of asymmetry of a frequency distribution; specifically the quotient of the difference between the arithmetic mean and the mode divided by the standard deviation. Positive skewness is defined for the longer slope of the plotted distribution in the direction of increasing variate values (mean greater than mode, or coarser particles exceed finer particles in a particle-size distribution); negative skewness is defined for the longer slope of the plotted distribution in the direction of decreasing variate values (mode greater than mean, or finer particles exceed coarser particles in a particle-size distribution). http://www.oceanscience.net/inletsonline/glossary.php3?name=skewness&start=s1 + skewness + + + + + + + + + Solidity equals to [Area]/[Convex area]. https://imagej.nih.gov/ij/docs/guide/146-30.html + solidity + + + + + + + + + The ratio of the surface area of a sphere - with the same volume as the particle considered - to the surface area of the particle. + sphericity + + + + + + + + + The diameter of a sphere having the same surface area as the projected particle + surface diameter + + + + + + + + + The sum of the all non-zero pixels. doi: 10.3109/17435390.2014.930195 + area + + + + + + + + + The sum of all non-zero pixels episodes, combining measures of contour elements, assuming that the contour is a square with a side equal to the unity. doi: 10.3109/17435390.2014.930195 + volume + + + + + + + + + Volume/ mass diameter doi: 10.3109/17435390.2014.930195 + volume mass diameter + + + + + + + + + Volume/ surface diameter, doi: 10.3109/17435390.2014.930195 + volume surface diameter + + + + + + + + + The aspect ratio of the particle’s fitted ellipse, i.e., [Major Axis]/[Minor Axis]. https://imagej.nih.gov/ij/docs/guide/146-30.html + aspect ratio + + + + + + + + GO descriptor + BIO descriptor using Gene Ontology information + gene ontology descriptors + + + + + + + + + Biology descriptors derived from omics data and integrated biological pathway/activities information + BIO descriptors + + + From b0aa7bd653f1017b070c4cc04260e3931d775e16 Mon Sep 17 00:00:00 2001 From: Javier Date: Tue, 16 Jul 2024 15:38:17 +0200 Subject: [PATCH 3/3] Internal terms to templates --- internal-dev/bao-ext.owl | 718 ++++++++++++++++++ internal-dev/bfo-ext.owl | 149 +++- internal-dev/cheminf-ext.owl | 73 -- internal-dev/efo-ext.owl | 65 ++ internal-dev/endpoints.owl | 7 +- internal-dev/go-ext.owl | 7 + internal-dev/iao-ext.owl | 448 +---------- internal-dev/ncit-ext.owl | 45 ++ internal-dev/obi-ext.owl | 686 +---------------- internal-dev/pato-ext.owl | 48 -- internal-dev/sio-ext.owl | 43 -- internal-dev/templates/assay.csv | 135 ++++ internal-dev/templates/bioassay.csv | 42 - internal-dev/templates/biological_process.csv | 5 + internal-dev/templates/cell_line.csv | 11 +- internal-dev/templates/chemical_entities.csv | 6 + internal-dev/templates/chemical_methods.csv | 4 + .../templates/computational_methods.csv | 95 +++ internal-dev/templates/endpoints.csv | 12 +- internal-dev/templates/enms.csv | 15 + .../templates/experimental_factors.csv | 23 + .../templates/information_content.csv | 95 +++ internal-dev/templates/lifecycle.csv | 11 + internal-dev/templates/pchem.csv | 31 +- internal-dev/templates/qsar.csv | 76 ++ internal-dev/templates/units.csv | 7 + scripts/src/internal_terms_update.sh | 114 ++- 27 files changed, 1614 insertions(+), 1357 deletions(-) create mode 100644 internal-dev/templates/assay.csv delete mode 100644 internal-dev/templates/bioassay.csv create mode 100644 internal-dev/templates/computational_methods.csv create mode 100644 internal-dev/templates/information_content.csv create mode 100644 internal-dev/templates/lifecycle.csv create mode 100644 internal-dev/templates/qsar.csv create mode 100644 internal-dev/templates/units.csv diff --git a/internal-dev/bao-ext.owl b/internal-dev/bao-ext.owl index e10fce36..af3fd611 100644 --- a/internal-dev/bao-ext.owl +++ b/internal-dev/bao-ext.owl @@ -325,8 +325,726 @@ + + + + + Dustiness (Vortex Shaker) assay + + + + + + + + + effective density assay + + + + + + + + + Dustiness (other set-up) assay + + + + + + + + + Dustiness (small drum) assay + + + + + + + Dustiness (large drum) assay + + + + + + + + + biochem analysis inhalation + + + + + + + Aerosol Characterisation Assay + + + + + + + + + Alamar Blue assay + + + + + + + TNF assay + tumor necrosis factor assay + + + + + + + + + An assay that measures the surface chemistry of an entity, e.g. of a nanoparticle. + surface chemistry assay + + + + + + + dustiness assay + + + + + + + barrier integrity assay + + + + + + + batch dispersion assay + + + + + + + density assay + + + + + + Column test + + + + + + + + An organism living an in water environment + aquatic organism + + + + + + + + + + + + An exposure medium is a substance through which something else is transmitted or carried during an exposure. + exposure medium + + + + + + + + + + + + + Aspect of deposit + + + + + + + + + + + + + + + + + biochemical analysis + + + + + + + + + Biodistribution + + + + + + + + + Blood counts + + + + + + + cell counts + + + + + + + + + + chromosomal damage in vitro + + + + + + + + + coating_MALDI-TOF + + + + + + + + + coating_STEM-EDS + + + + + + + + + COMET - systemic genotoxicity + + + + + + + + + composition_EDX + + + + + + + + + composition ICP-OES + + + + + + + + + Confocal Raman Microscopy (CRM) + + + + + + + + + Cytokine secretion MPh + + + + + + + + + Cytokine levels + + + + + + + + + + + + + FACS analysis + + + + + + + + + filtration_ICP-MS + + + + + + + + + filtration_WDXRF + + + + + + + + + functional groups_ATR-FTIR + + + + + + + + + functional groups_TGA + + + + + + + + + hCTA + + + + + + + + + hemolysis + + + + + + + + + histopathology + + + + + + + + + hystopathology + + + + + + + + + IBM + + + + + + + + + Impedence_flow cytom + + + + + + + + + isoElectric point + + + + + + + + + LDH + + + + + + + + + lung genotoxicity + + + + + + + + + mass concentration + + + + + + + + + Micronuclei - sistemic genotox + + + + + + + + + Micronucleus + + + + + + + + + mRNA expression in vivo + + + + + + + + + MTS + + + + + + + + + MW digestion + ICP-MS + + + + + + + + + neutral red uptake assay + + + + + + + + + NO production + + + + + + + + + NP crossing ICP-OES + + + + + + + + + + + + + + + NP crossing ToF-SIMS + + + + + + + + + NP intracell pen(confocal micro + + + + + + + + + NPs crossing TEM-SEM + + + + + + + + + oral mucosa 3Dmodel penetration + + + + + + + + + PIG-A sistemic genotox + + + + + + + + + Polyclonal proliferation + + + + + + + + + Potentiometry_H2O sosp + + + + + + + + + RT- Impedence_adherence cell + + + + + + + + + Serum cytokine + + + + + + + + + Serum total antibodies + + + + + + + + + soil - C. Elegans + + + + + + + + + TEER + + + + + + + + + TEM observation + + + + + + + + + TEM-SEM - intracell penetration + + + + + + + + + ToF-SIMS + + + + + + + + + water - algae - P.subcap + + + + + + + + + water - fish - D Rerio + + + + + + + + + water - microalgae - D. Magna + + + + + + + + + WAXD + + + + + + + + + XRD + + + + + + + + + z-pot + + + + + + + + Ferric Reduction Ability of Serum + FRAS + Assay measuring the surface reactivity of nanomaterials under physiological conditions to determine their dose-dependent oxidative damage + + + + + + + Bronchial Lavage Fluid cytometry assay + Bronchial Lavage Fluid counts + Assay counting blood cells like neutrophils, macrophages, eosinophils or lymphocytes in bronchoalveolar lavage fluid + + + + + + + + + + + + + + + + + + diff --git a/internal-dev/bfo-ext.owl b/internal-dev/bfo-ext.owl index 98f4101c..77550cda 100644 --- a/internal-dev/bfo-ext.owl +++ b/internal-dev/bfo-ext.owl @@ -65,8 +65,6 @@ - - @@ -75,6 +73,153 @@ boiling point + + + + + A crystal structure following the formula ABX3 + perovskite + + + + + + + Increased energy price of a reaction due to steric effects (the atomic spacial arrangement in a molecule or ion) + Steric hindrance + + + + + + + + Point defects in the bulk or surface of a material + Oxygen vacancies + + + + + + + Interaction potential + + + + + + + mesoporosity + + Structural quality of a material containing pores with diameters between 2 and 50 nm + + + + + + + Electronic chemical potential, μ, is a measure of the escaping tendency of an electronic cloud and corresponds to the negative of the electronegativity c. Considering a finite difference approximation and a quadratic dependence of energy on the number of electrons, the electronegativity approximates the loss or gain in charge by the ionization potential IP and electron affinity EA, that is χMU is approximately (IP+EA)/2=-μ , χMU is Mulliken electronegativity. + electronic chemical potential + + + + + + + + Mulliken electronegativity = -α, where α = the average of the HOMO and LUMO energies, i.e., α = ½(εhomo+ εlumo) http://openmopac.net/manual/super.html + Mullikens electronegativity Xc + + + + + + + + + Parr & Pople absolute hardness = ½(εhomo- εlumo) http://openmopac.net/manual/super.html + parr and poples absolute hardness + + + + + + + + + Polarizability derived from the dipole moment Ad + polarizability derived from the dipole moment ad + + + + + + + Polarizability derived from the heat of formation Ahof. + polarizability derived from the heat of formation ahof + + + + + + + + + Schuurmann MO shift alpha = α, where α = the average of the HOMO and LUMO energies, i.e., α = ½(εhomo+ εlumo) http://openmopac.net/manual/super.html + schuurmann mo shift alpha + + + + + + + + + The solvent accessible surface is a continuous surface of the molecule which can be reached by the center of charge of a solvent molecule. http://openmopac.net/manual/cosmo.html + solvent accessible surface + + + + + + + + + Total energy equals to (Eelect + Enuc), where Eelect is the electronic energy, Enuc is the nuclear-nuclear repulsion energy. http://openmopac.net/manual/SCF_calc_hof.html + total energy + + + + + + + + + The total softness S is defined as S=0.5*η, where η is the absolute hardness. Defined in page 629 of: Molecular descriptors for chemoinformatics (2 volumes), Roberto Todeschini, Viviana Consonni, 2009, Volume 41, Wiley-VCH. + total softness + + + + + + + + + The valence band is the highest range of electron energies in which electrons are normally present at absolute zero temperature. https://en.wikipedia.org/wiki/Valence_and_conduction_bands + valence band + + + + + + + + + Zeta potential derived from Quantum Mechanics Calculations. + zeta potential + + + diff --git a/internal-dev/cheminf-ext.owl b/internal-dev/cheminf-ext.owl index 1f95b7c0..fcefe515 100644 --- a/internal-dev/cheminf-ext.owl +++ b/internal-dev/cheminf-ext.owl @@ -33,13 +33,7 @@ PrefLabel - - - - - - - - - - - Descriptors that have been obtained through modelling. - predicted descriptors - - - - - - Descriptors that have been obtained through modelling. - calculated descriptors - - - - - - - A class of descriptors derived using CDK, the Chemistry Development Kit. - cdk descriptors - - - - - - - PMCID is a unique identifier for publications archived in PubMed Central, which may also be indexed in PubMed. - PubMedCentral Identifier (PMCID) - - - - - - - A crystal structure following the formula ABX3 - perovskite - - - - - - - Increased energy price of a reaction due to steric effects (the atomic spacial arrangement in a molecule or ion) - Steric hindrance - - - - - - - Point defects in the bulk or surface of a material - Oxygen vacancies - - - - - - - - BET surface area endpoint - - - - - Interaction potential - diff --git a/internal-dev/efo-ext.owl b/internal-dev/efo-ext.owl index 17dae8c6..1a3e7487 100644 --- a/internal-dev/efo-ext.owl +++ b/internal-dev/efo-ext.owl @@ -84,5 +84,70 @@ Pulmonary instillation + + + + + Tracheal instillation + + + + + + + + + + + + + + subcutaneous injection via hydrogel + + + + + + + + + + + + + Instillation + Drop by drop application of a liquid substance into or onto a location in an organism + + + + + + + + Deposition rate + + + + + + + Homoaggregation rate + + + + + + + Chloride concentration + + + + + + + The amount of dissolved substance versus time (determined by the crystal forces) as an experimental value, where solid particles (usually crystalline) are released into solution as individual free molecules. + Dissolution rate + + diff --git a/internal-dev/endpoints.owl b/internal-dev/endpoints.owl index d7048b2c..17802510 100644 --- a/internal-dev/endpoints.owl +++ b/internal-dev/endpoints.owl @@ -983,9 +983,14 @@ solubility endpoint - + + + + BET surface area endpoint + + diff --git a/internal-dev/go-ext.owl b/internal-dev/go-ext.owl index bbc2a97f..8b56a7b0 100644 --- a/internal-dev/go-ext.owl +++ b/internal-dev/go-ext.owl @@ -52,5 +52,12 @@ Photocatalytic activity + + + + Pathogen-associated molecular patterns + parts of biomolecules associated with pathogens, such as bacteria, viruses, fungi, and other microorganisms, and can be recognized by pattern recognition receptors (PRRs) of the innate immune system + + diff --git a/internal-dev/iao-ext.owl b/internal-dev/iao-ext.owl index 1715f626..0c112727 100644 --- a/internal-dev/iao-ext.owl +++ b/internal-dev/iao-ext.owl @@ -50,9 +50,6 @@ /////////////////////////////////////////////////////////////////////////////////////// --> - - - @@ -238,23 +235,11 @@ - - - - The molecular descriptor is the final result of a logic and mathematical procedure which transforms chemical information encoded within a symbolic representation of a molecule into a useful number or the result of some standardized experiment. https://en.wikipedia.org/wiki/Molecular_descriptor - descriptor - - - - - A class of descriptors derived by Image analysis methodologies, developed within the eNanoMapper project. https://www.enanomapper.net/deliverables/d4/150801_eNanoMapper-D4_2final.pdf - image analysis descriptors - @@ -315,16 +300,6 @@ - - - - - Descriptors derived from quantum mechanical calculations. - quantum mechanical descriptor - - - - @@ -335,13 +310,7 @@ - - - - Descriptors derived from biological information (partially or fully). - biological descriptor - @@ -402,23 +371,11 @@ - - - - Size of the core. - core size - - - - - The longest distance between any two points along the selection boundary, also known as maximum caliper. https://imagej.nih.gov/ij/docs/guide/146-30.html - feret diameter - @@ -430,216 +387,21 @@ fit ellipse - - - - - - - Calculates and displays two values: "IntDen" (the product of Area and Mean Grey Value) and "RawIntDen" (the sum of the pixel values in the image or selection). "IntDen" and "RawIntDen" values are the same for uncalibrated image. doi: 10.3109/17435390.2014.930195 - integrated density - - - - - - - - - The fourth order moment about the mean. doi: 10.3109/17435390.2014.930195 - kurtosis - - - - - - - - - Average grey value within the selection. In this value the sum of all pixels within the selection is divided by the count of pixels. If the image is not in grey scale then a transformation is made according to the following formula: grey=0.299red+0.587green+0.114blue. http://www.enanomapper.net/deliverables/d4/150801_eNanoMapper-D4_2final.pdf - mean grey value - - - - - - - - - The median value of the pixels in the image or selection. - median - - - - - The lowest grey scale values appearing in the selection. - min grey levels - - - - - The highest grey scale values appearing in the selection. - max grey levels - - - - - Stands for the most frequently occurring grey value within the selection. - modal grey value - - - - - - The size of the particle as measured when in a specific media. - particle size in media - - - - - - - - - The sum of the relative differences in intensities between values of neighboring pixels (xi and yi) along the X axis. - porosity x - - - - - - - - - The sum of the relative differences in intensities between values of neighboring pixels (xi and yi) along the Y axis. - porosity y - - - - - - - - - The inverse of Aspect Ratio, or 4 ×[Area]/π × [Major axis]2. https://imagej.nih.gov/ij/docs/guide/146-30.html - roundness - - - - - - - - - This is a group of descriptors (Circularity, Aspect Ratio, Roundness and Solidity) that are all calculated when the "Shape descriptors" option is used. http://www.enanomapper.net/deliverables/d4/150801_eNanoMapper-D4_2final.pdf - shape descriptors - - - - - - - - - A measure of asymmetry of a frequency distribution; specifically the quotient of the difference between the arithmetic mean and the mode divided by the standard deviation. Positive skewness is defined for the longer slope of the plotted distribution in the direction of increasing variate values (mean greater than mode, or coarser particles exceed finer particles in a particle-size distribution); negative skewness is defined for the longer slope of the plotted distribution in the direction of decreasing variate values (mode greater than mean, or finer particles exceed coarser particles in a particle-size distribution). http://www.oceanscience.net/inletsonline/glossary.php3?name=skewness&start=s1 - skewness - - - - - - - - - Solidity equals to [Area]/[Convex area]. https://imagej.nih.gov/ij/docs/guide/146-30.html - solidity - - - - - - - - - The ratio of the surface area of a sphere - with the same volume as the particle considered - to the surface area of the particle. - sphericity - - - - - - - - - The diameter of a sphere having the same surface area as the projected particle - surface diameter - - - - - - - - - The sum of the all non-zero pixels. doi: 10.3109/17435390.2014.930195 - area - - - - - - - - - The sum of all non-zero pixels episodes, combining measures of contour elements, assuming that the contour is a square with a side equal to the unity. doi: 10.3109/17435390.2014.930195 - volume - - - - - - - - - Volume/ mass diameter doi: 10.3109/17435390.2014.930195 - volume mass diameter - - - - - - - - - Volume/ surface diameter, doi: 10.3109/17435390.2014.930195 - volume surface diameter - - - - - - - - - The aspect ratio of the particle’s fitted ellipse, i.e., [Major Axis]/[Minor Axis]. https://imagej.nih.gov/ij/docs/guide/146-30.html - aspect ratio - - @@ -652,25 +414,6 @@ - - - - - GO descriptor - BIO descriptor using Gene Ontology information - gene ontology descriptors - - - - - - - - - Biology descriptors derived from omics data and integrated biological pathway/activities information - BIO descriptors - - @@ -1002,116 +745,6 @@ - - - - - Electronic chemical potential, μ, is a measure of the escaping tendency of an electronic cloud and corresponds to the negative of the electronegativity c. Considering a finite difference approximation and a quadratic dependence of energy on the number of electrons, the electronegativity approximates the loss or gain in charge by the ionization potential IP and electron affinity EA, that is χMU is approximately (IP+EA)/2=-μ , χMU is Mulliken electronegativity. - electronic chemical potential - - - - - - - - - Mulliken electronegativity = -α, where α = the average of the HOMO and LUMO energies, i.e., α = ½(εhomo+ εlumo) http://openmopac.net/manual/super.html - Mullikens electronegativity Xc - - - - - - - - - Parr & Pople absolute hardness = ½(εhomo- εlumo) http://openmopac.net/manual/super.html - parr and poples absolute hardness - - - - - - - - - Polarizability derived from the dipole moment Ad - polarizability derived from the dipole moment ad - - - - - - - - - Polarizability derived from the heat of formation Ahof. - polarizability derived from the heat of formation ahof - - - - - - - - - Schuurmann MO shift alpha = α, where α = the average of the HOMO and LUMO energies, i.e., α = ½(εhomo+ εlumo) http://openmopac.net/manual/super.html - schuurmann mo shift alpha - - - - - - - - - The solvent accessible surface is a continuous surface of the molecule which can be reached by the center of charge of a solvent molecule. http://openmopac.net/manual/cosmo.html - solvent accessible surface - - - - - - - - - Total energy equals to (Eelect + Enuc), where Eelect is the electronic energy, Enuc is the nuclear-nuclear repulsion energy. http://openmopac.net/manual/SCF_calc_hof.html - total energy - - - - - - - - - The total softness S is defined as S=0.5*η, where η is the absolute hardness. Defined in page 629 of: Molecular descriptors for chemoinformatics (2 volumes), Roberto Todeschini, Viviana Consonni, 2009, Volume 41, Wiley-VCH. - total softness - - - - - - - - - The valence band is the highest range of electron energies in which electrons are normally present at absolute zero temperature. https://en.wikipedia.org/wiki/Valence_and_conduction_bands - valence band - - - - - - - - - Zeta potential derived from Quantum Mechanics Calculations. - zeta potential - - - - @@ -1221,87 +854,12 @@ - - - - - - Aerosol Characterisation Assay - - - - - - - - - Alamar Blue assay - - - - - - - - - biochem analysis inhalation - - - - DNA-damage lung - - - - - - - - Dustiness (large drum) assay - - - - - - - - - Dustiness (other set-up) assay - - - - - - - - - Dustiness (small drum) assay - - - - - - - - - Dustiness (Vortex Shaker) assay - - - - - - - - - effective density assay - - - @@ -1310,7 +868,13 @@ research organisation registry identifier + + + + PMCID is a unique identifier for publications archived in PubMed Central, which may also be indexed in PubMed. + PubMedCentral Identifier (PMCID) + diff --git a/internal-dev/ncit-ext.owl b/internal-dev/ncit-ext.owl index de66b955..57c172cf 100644 --- a/internal-dev/ncit-ext.owl +++ b/internal-dev/ncit-ext.owl @@ -138,4 +138,49 @@ + + + has_qualifier + + + + + + + + + + + organ quality + + + + + + + + organ type + + + + + + + + organ type + + + + + + + cell type + + diff --git a/internal-dev/obi-ext.owl b/internal-dev/obi-ext.owl index 32f03e5f..d002310b 100644 --- a/internal-dev/obi-ext.owl +++ b/internal-dev/obi-ext.owl @@ -16,688 +16,4 @@ This ontology contains proposed extensions to the Ontology for Biomedical Investigations, which in due course will be submitted to the OBI. - - - - - - Column test - - - - - - - - An organism living an in water environment - aquatic organism - - - - - - - - - TNF assay - tumor necrosis factor assay - - - - - - - - - An assay that measures the surface chemistry of an entity, e.g. of a nanoparticle. - surface chemistry assay - - - - - - - - - An exposure medium is a substance through which something else is transmitted or carried during an exposure. - exposure medium - - - - - - - - - dustiness assay - - - - - - - - - Aspect of deposit - - - - - - - - - barrier integrity assay - - - - - - - - - batch dispersion assay - - - - - - - - - biochemical analysis - - - - - - - - - Biodistribution - - - - - - - - - Blood counts - - - - - - - - - cell counts - - - - - - - - - - chromosomal damage in vitro - - - - - - - - - coating_MALDI-TOF - - - - - - - - - coating_STEM-EDS - - - - - - - - - COMET - systemic genotoxicity - - - - - - - - - composition_EDX - - - - - - - - - composition ICP-OES - - - - - - - - - Confocal Raman Microscopy (CRM) - - - - - - - - - Cytokine secretion MPh - - - - - - - - - Cytokine levels - - - - - - - - - density assay - - - - - - - - - FACS analysis - - - - - - - - - filtration_ICP-MS - - - - - - - - - filtration_WDXRF - - - - - - - - - functional groups_ATR-FTIR - - - - - - - - - functional groups_TGA - - - - - - - - - hCTA - - - - - - - - - hemolysis - - - - - - - - - histopathology - - - - - - - - - hystopathology - - - - - - - - - IBM - - - - - - - - - Impedence_flow cytom - - - - - - - - - isoElectric point - - - - - - - - - LDH - - - - - - - - - lung genotoxicity - - - - - - - - - mass concentration - - - - - - - - - Micronuclei - sistemic genotox - - - - - - - - - Micronucleus - - - - - - - - - mRNA expression in vivo - - - - - - - - - MTS - - - - - - - - - MW digestion + ICP-MS - - - - - - - - - neutral red uptake assay - - - - - - - - - NO production - - - - - - - - - NP crossing ICP-OES - - - - - - - - - - - - - - - NP crossing ToF-SIMS - - - - - - - - - NP intracell pen(confocal micro - - - - - - - - - NPs crossing TEM-SEM - - - - - - - - - oral mucosa 3Dmodel penetration - - - - - - - - - PIG-A sistemic genotox - - - - - - - - - Polyclonal proliferation - - - - - - - - - Potentiometry_H2O sosp - - - - - - - - - RT- Impedence_adherence cell - - - - - - - - - Serum cytokine - - - - - - - - - Serum total antibodies - - - - - - - - - soil - C. Elegans - - - - - - - - - TEER - - - - - - - - - TEM observation - - - - - - - - - TEM-SEM - intracell penetration - - - - - - - - - ToF-SIMS - - - - - - - - - water - algae - P.subcap - - - - - - - - - water - fish - D Rerio - - - - - - - - - water - microalgae - D. Magna - - - - - - - - - WAXD - - - - - - - - - XRD - - - - - - - - - z-pot - - - - - - - - Ferric Reduction Ability of Serum - FRAS - Assay measuring the surface reactivity of nanomaterials under physiological conditions to determine their dose-dependent oxidative damage - - - - - - - Bronchial Lavage Fluid cytometry assay - Bronchial Lavage Fluid counts - Assay counting blood cells like neutrophils, macrophages, eosinophils or lymphocytes in bronchoalveolar lavage fluid - - - - - - - - - - - - - - Instillation - Drop by drop application of a liquid substance into or onto a location in an organism - - - - - - - - Tracheal instillation - - - - - - - - - - - - - - subcutaneous injection via hydrogel - - - - - - - - - - - - - - - - - - - + \ No newline at end of file diff --git a/internal-dev/pato-ext.owl b/internal-dev/pato-ext.owl index c68cbedd..11d7ff50 100644 --- a/internal-dev/pato-ext.owl +++ b/internal-dev/pato-ext.owl @@ -16,58 +16,10 @@ - - - - Deposition rate - - - - - Homoaggregation rate - - - - - - Chloride concentration - - - - - - - average size - - - - - - - The amount of dissolved substance versus time (determined by the crystal forces) as an experimental value, where solid particles (usually crystalline) are released into solution as individual free molecules. - Dissolution rate - - - - - - - mesoporosity - - Structural quality of a material containing pores with diameters between 2 and 50 nm - - - - - - - Pathogen-associated molecular patterns - parts of biomolecules associated with pathogens, such as bacteria, viruses, fungi, and other microorganisms, and can be recognized by pattern recognition receptors (PRRs) of the innate immune system - diff --git a/internal-dev/sio-ext.owl b/internal-dev/sio-ext.owl index d8e8d2b8..206172ae 100644 --- a/internal-dev/sio-ext.owl +++ b/internal-dev/sio-ext.owl @@ -34,48 +34,5 @@ // /////////////////////////////////////////////////////////////////////////////////////// --> - - - has_qualifier - - - - - - - - - - organ quality - - - - - - - - organ type - - - - - - - - organ type - - - - - - - cell type - diff --git a/internal-dev/templates/assay.csv b/internal-dev/templates/assay.csv new file mode 100644 index 00000000..ee02b4dc --- /dev/null +++ b/internal-dev/templates/assay.csv @@ -0,0 +1,135 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +CHMO:0000087,,http://purl.obolibrary.org/obo/CHMO_0000087,,,http://purl.enanomapper.net/onto/ENM_5562662,,,,,http://www.w3.org/2002/07/owl#Class,, +GO:0051641,,http://purl.obolibrary.org/obo/GO_0051641,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000115,,http://purl.obolibrary.org/obo/IAO_0000115,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +IAO:0000118,,http://purl.obolibrary.org/obo/IAO_0000118,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +IAO:0000119,,http://purl.obolibrary.org/obo/IAO_0000119,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +OBI:0000070,,http://purl.obolibrary.org/obo/OBI_0000070,,,http://purl.enanomapper.org/onto/ENM_0000112|http://purl.enanomapper.org/onto/ENM_8000060|http://purl.enanomapper.org/onto/ENM_8000223|http://purl.enanomapper.org/onto/ENM_8000225|http://purl.enanomapper.org/onto/ENM_8000226|http://purl.enanomapper.org/onto/ENM_8000227|http://purl.enanomapper.org/onto/ENM_8000228|http://purl.enanomapper.org/onto/ENM_8000230|http://purl.enanomapper.org/onto/ENM_8000231|http://purl.enanomapper.org/onto/ENM_8000233|http://purl.enanomapper.org/onto/ENM_8000236|http://purl.enanomapper.org/onto/ENM_8000237|http://purl.enanomapper.org/onto/ENM_8000238|http://purl.enanomapper.org/onto/ENM_8000241|http://purl.enanomapper.org/onto/ENM_8000242|http://purl.enanomapper.org/onto/ENM_8000243|http://purl.enanomapper.org/onto/ENM_8000244|http://purl.enanomapper.org/onto/ENM_8000246|http://purl.enanomapper.org/onto/ENM_8000247|http://purl.enanomapper.org/onto/ENM_8000248|http://purl.enanomapper.org/onto/ENM_8000257|http://purl.enanomapper.org/onto/ENM_8000258|http://purl.enanomapper.org/onto/ENM_8000259|http://purl.enanomapper.org/onto/ENM_8000260|http://purl.enanomapper.org/onto/ENM_8000261|http://purl.enanomapper.org/onto/ENM_8000262|http://purl.enanomapper.org/onto/ENM_8000263|http://purl.enanomapper.org/onto/ENM_8000264|http://purl.enanomapper.org/onto/ENM_8000265|http://purl.enanomapper.org/onto/ENM_8000266|http://purl.enanomapper.org/onto/ENM_8000267|http://purl.enanomapper.org/onto/ENM_8000268|http://purl.enanomapper.org/onto/ENM_8000269|http://purl.enanomapper.org/onto/ENM_8000270|http://purl.enanomapper.org/onto/ENM_8000271|http://purl.enanomapper.org/onto/ENM_8000272|http://purl.enanomapper.org/onto/ENM_8000273|http://purl.enanomapper.org/onto/ENM_8000274|http://purl.enanomapper.org/onto/ENM_8000275|http://purl.enanomapper.org/onto/ENM_8000276|http://purl.enanomapper.org/onto/ENM_8000277|http://purl.enanomapper.org/onto/ENM_8000278|http://purl.enanomapper.org/onto/ENM_8000279|http://purl.enanomapper.org/onto/ENM_8000280|http://purl.enanomapper.org/onto/ENM_8000281|http://purl.enanomapper.org/onto/ENM_8000282|http://purl.enanomapper.org/onto/ENM_8000283|http://purl.enanomapper.org/onto/ENM_8000285|http://purl.enanomapper.org/onto/ENM_8000286|http://purl.enanomapper.org/onto/ENM_8000287|http://purl.enanomapper.org/onto/ENM_8000289|http://purl.enanomapper.org/onto/ENM_8000290|http://purl.enanomapper.org/onto/ENM_8000291|http://purl.enanomapper.org/onto/ENM_8000300|http://purl.enanomapper.org/onto/ENM_8000301|http://purl.enanomapper.org/onto/ENM_8000302|http://purl.enanomapper.org/onto/ENM_8000303|http://purl.enanomapper.org/onto/ENM_8000304|http://purl.enanomapper.org/onto/ENM_8000307|http://purl.enanomapper.org/onto/ENM_8000308|http://purl.enanomapper.org/onto/ENM_8000309|http://purl.enanomapper.org/onto/ENM_8000310|http://purl.enanomapper.org/onto/ENM_8000311|http://purl.enanomapper.org/onto/ENM_8000312|http://purl.enanomapper.org/onto/ENM_9000009|http://purl.enanomapper.org/onto/ENM_9000011,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0000891,,http://purl.obolibrary.org/obo/OBI_0000891,,,http://purl.enanomapper.org/onto/ENM_8000224,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0000916,,http://purl.obolibrary.org/obo/OBI_0000916,,,http://purl.enanomapper.net/onto/ENM_0801504|http://purl.enanomapper.net/onto/ENM_3323766|http://purl.enanomapper.net/onto/ENM_4869361|http://purl.enanomapper.net/onto/ENM_9802609,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0001501,,http://purl.obolibrary.org/obo/OBI_0001501,,,http://purl.enanomapper.net/onto/ENM_3221617,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0001977,,http://purl.obolibrary.org/obo/OBI_0001977,,,http://purl.enanomapper.net/onto/ENM_1855822,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0002167,,http://purl.obolibrary.org/obo/OBI_0002167,,http://www.bioassayontology.org/bao#BAO_0000208 some http://purl.obolibrary.org/obo/GO_0051641,,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0100026,,http://purl.obolibrary.org/obo/OBI_0100026,,,http://purl.enanomapper.org/onto/ENM_0000113,,,,,http://www.w3.org/2002/07/owl#Class,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.net/onto/ENM_0801504,"5(6)-Carboxy-2′,7′-dichlorofluorescein diacetate assay",http://purl.enanomapper.net/onto/ENM_0801504,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1530072,Thiobarbituric Acid Reactive Substances assay,http://purl.enanomapper.net/onto/ENM_1530072,,http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1648790,Chemiluminiscence of luminol assay detecting reactive oxygen species ex vivo,http://purl.enanomapper.net/onto/ENM_1648790,,http://www.bioassayontology.org/bao#BAO_0000208 some http://purl.enanomapper.net/onto/ENM_3332709|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1648791,HPI assay,http://purl.enanomapper.net/onto/ENM_1648791,,http://www.bioassayontology.org/bao#BAO_0010053,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1855822,Bronchial Lavage Fluid cytometry assay,http://purl.enanomapper.net/onto/ENM_1855822,,http://purl.obolibrary.org/obo/OBI_0001977|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0080041,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3221617,H2DCFDA fluorescence assay,http://purl.enanomapper.net/onto/ENM_3221617,,http://purl.obolibrary.org/obo/OBI_0001501|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3323766,Dihydroethidium flow cytometry assay,http://purl.enanomapper.net/onto/ENM_3323766,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3323768,Cellular glutathione quantification assay,http://purl.enanomapper.net/onto/ENM_3323768,,http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,http://purl.enanomapper.net/onto/ENM_5666044,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3332709,,http://purl.enanomapper.net/onto/ENM_3332709,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_4869361,Dichlorodihydrofluorescein flow cytometry assay,http://purl.enanomapper.net/onto/ENM_4869361,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5562662,Rhodamine 123 fluorescence microscopy assay,http://purl.enanomapper.net/onto/ENM_5562662,,http://purl.obolibrary.org/obo/CHMO_0000087|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5666044,MCB cellular GSH quantification assay,http://purl.enanomapper.net/onto/ENM_5666044,,http://purl.enanomapper.net/onto/ENM_3323768,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5723277,Autophagy assay,http://purl.enanomapper.net/onto/ENM_5723277,,http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002993,http://purl.enanomapper.net/onto/ENM_5723278,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5723278,LC3B II assay,http://purl.enanomapper.net/onto/ENM_5723278,,http://purl.enanomapper.net/onto/ENM_5723277,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_8100001,IC50 (Hill model),http://purl.enanomapper.net/onto/ENM_8100001,,http://www.bioassayontology.org/bao#BAO_0000190 and (http://www.bioassayontology.org/bao#BAO_0000335 some http://www.bioassayontology.org/bao#BAO_0000435),,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_8100002,HPRT - gene mutation base test,http://purl.enanomapper.net/onto/ENM_8100002,,http://www.bioassayontology.org/bao#BAO_0002167,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_8553741,,http://purl.enanomapper.net/onto/ENM_8553741,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9802609,DHR123 flow cytometry assay,http://purl.enanomapper.net/onto/ENM_9802609,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000112,Column test,http://purl.enanomapper.org/onto/ENM_0000112,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000113,aquatic organism,http://purl.enanomapper.org/onto/ENM_0000113,,http://purl.obolibrary.org/obo/OBI_0100026,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000060,exposure medium,http://purl.enanomapper.org/onto/ENM_8000060,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000223,Aerosol Characterisation Assay,http://purl.enanomapper.org/onto/ENM_8000223,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000224,Alamar Blue assay,http://purl.enanomapper.org/onto/ENM_8000224,,http://purl.obolibrary.org/obo/OBI_0000891,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000225,dustiness assay,http://purl.enanomapper.org/onto/ENM_8000225,,http://purl.obolibrary.org/obo/OBI_0000070,http://purl.enanomapper.org/onto/ENM_8000250|http://purl.enanomapper.org/onto/ENM_8000251|http://purl.enanomapper.org/onto/ENM_8000252|http://purl.enanomapper.org/onto/ENM_8000253,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000226,Aspect of deposit,http://purl.enanomapper.org/onto/ENM_8000226,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000227,barrier integrity assay,http://purl.enanomapper.org/onto/ENM_8000227,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000228,batch dispersion assay,http://purl.enanomapper.org/onto/ENM_8000228,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000229,biochem analysis inhalation,http://purl.enanomapper.org/onto/ENM_8000229,,http://purl.enanomapper.org/onto/ENM_8000230,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000230,biochemical analysis,http://purl.enanomapper.org/onto/ENM_8000230,,http://purl.obolibrary.org/obo/OBI_0000070,http://purl.enanomapper.org/onto/ENM_8000229,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000231,Biodistribution,http://purl.enanomapper.org/onto/ENM_8000231,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000232,Blood counts,http://purl.enanomapper.org/onto/ENM_8000232,,http://purl.enanomapper.org/onto/ENM_8000233,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000233,cell counts,http://purl.enanomapper.org/onto/ENM_8000233,,http://purl.obolibrary.org/obo/OBI_0000070,http://purl.enanomapper.org/onto/ENM_8000232,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000235,colony forming efficiency (CFE) assay,http://purl.enanomapper.org/onto/ENM_8000235,,http://www.bioassayontology.org/bao#BAO_0002993,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000236,chromosomal damage in vitro,http://purl.enanomapper.org/onto/ENM_8000236,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000237,coating_MALDI-TOF,http://purl.enanomapper.org/onto/ENM_8000237,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000238,coating_STEM-EDS,http://purl.enanomapper.org/onto/ENM_8000238,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000241,COMET - systemic genotoxicity,http://purl.enanomapper.org/onto/ENM_8000241,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000242,composition_EDX,http://purl.enanomapper.org/onto/ENM_8000242,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000243,composition ICP-OES,http://purl.enanomapper.org/onto/ENM_8000243,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000244,Confocal Raman Microscopy (CRM),http://purl.enanomapper.org/onto/ENM_8000244,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000246,Cytokine secretion MPh,http://purl.enanomapper.org/onto/ENM_8000246,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000247,Cytokine levels,http://purl.enanomapper.org/onto/ENM_8000247,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000248,density assay,http://purl.enanomapper.org/onto/ENM_8000248,,http://purl.obolibrary.org/obo/OBI_0000070,http://purl.enanomapper.org/onto/ENM_8000254,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000250,Dustiness (large drum) assay,http://purl.enanomapper.org/onto/ENM_8000250,,http://purl.enanomapper.org/onto/ENM_8000225,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000251,Dustiness (other set-up) assay,http://purl.enanomapper.org/onto/ENM_8000251,,http://purl.enanomapper.org/onto/ENM_8000225,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000252,Dustiness (small drum) assay,http://purl.enanomapper.org/onto/ENM_8000252,,http://purl.enanomapper.org/onto/ENM_8000225,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000253,Dustiness (Vortex Shaker) assay,http://purl.enanomapper.org/onto/ENM_8000253,,http://purl.enanomapper.org/onto/ENM_8000225,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000254,effective density assay,http://purl.enanomapper.org/onto/ENM_8000254,,http://purl.enanomapper.org/onto/ENM_8000248,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000257,FACS analysis,http://purl.enanomapper.org/onto/ENM_8000257,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000258,filtration_ICP-MS,http://purl.enanomapper.org/onto/ENM_8000258,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000259,filtration_WDXRF,http://purl.enanomapper.org/onto/ENM_8000259,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000260,functional groups_ATR-FTIR,http://purl.enanomapper.org/onto/ENM_8000260,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000261,functional groups_TGA,http://purl.enanomapper.org/onto/ENM_8000261,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000262,hCTA,http://purl.enanomapper.org/onto/ENM_8000262,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000263,hemolysis,http://purl.enanomapper.org/onto/ENM_8000263,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000264,histopathology,http://purl.enanomapper.org/onto/ENM_8000264,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000265,hystopathology,http://purl.enanomapper.org/onto/ENM_8000265,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000266,IBM,http://purl.enanomapper.org/onto/ENM_8000266,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000267,Impedence_flow cytom,http://purl.enanomapper.org/onto/ENM_8000267,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000268,isoElectric point,http://purl.enanomapper.org/onto/ENM_8000268,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000269,LDH,http://purl.enanomapper.org/onto/ENM_8000269,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000270,lung genotoxicity,http://purl.enanomapper.org/onto/ENM_8000270,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000271,mass concentration,http://purl.enanomapper.org/onto/ENM_8000271,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000272,Micronuclei - sistemic genotox,http://purl.enanomapper.org/onto/ENM_8000272,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000273,Micronucleus,http://purl.enanomapper.org/onto/ENM_8000273,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000274,mRNA expression in vivo,http://purl.enanomapper.org/onto/ENM_8000274,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000275,MTS,http://purl.enanomapper.org/onto/ENM_8000275,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000276,MW digestion + ICP-MS,http://purl.enanomapper.org/onto/ENM_8000276,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000277,neutral red uptake assay,http://purl.enanomapper.org/onto/ENM_8000277,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000278,NO production,http://purl.enanomapper.org/onto/ENM_8000278,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000279,NP crossing ICP-OES,http://purl.enanomapper.org/onto/ENM_8000279,,http://purl.obolibrary.org/obo/OBI_0000070|http://www.bioassayontology.org/bao#BAO_0000208 some http://purl.enanomapper.net/onto/ENM_8553741,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000280,NP crossing ToF-SIMS,http://purl.enanomapper.org/onto/ENM_8000280,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000281,NP intracell pen(confocal micro,http://purl.enanomapper.org/onto/ENM_8000281,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000282,NPs crossing TEM-SEM,http://purl.enanomapper.org/onto/ENM_8000282,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000283,oral mucosa 3Dmodel penetration,http://purl.enanomapper.org/onto/ENM_8000283,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000285,PIG-A sistemic genotox,http://purl.enanomapper.org/onto/ENM_8000285,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000286,Polyclonal proliferation,http://purl.enanomapper.org/onto/ENM_8000286,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000287,Potentiometry_H2O sosp,http://purl.enanomapper.org/onto/ENM_8000287,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000289,RT- Impedence_adherence cell,http://purl.enanomapper.org/onto/ENM_8000289,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000290,Serum cytokine,http://purl.enanomapper.org/onto/ENM_8000290,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000291,Serum total antibodies,http://purl.enanomapper.org/onto/ENM_8000291,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000300,soil - C. Elegans,http://purl.enanomapper.org/onto/ENM_8000300,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000301,TEER,http://purl.enanomapper.org/onto/ENM_8000301,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000302,TEM observation,http://purl.enanomapper.org/onto/ENM_8000302,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000303,TEM-SEM - intracell penetration,http://purl.enanomapper.org/onto/ENM_8000303,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000304,ToF-SIMS,http://purl.enanomapper.org/onto/ENM_8000304,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000307,water - algae - P.subcap,http://purl.enanomapper.org/onto/ENM_8000307,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000308,water - fish - D Rerio,http://purl.enanomapper.org/onto/ENM_8000308,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000309,water - microalgae - D. Magna,http://purl.enanomapper.org/onto/ENM_8000309,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000310,WAXD,http://purl.enanomapper.org/onto/ENM_8000310,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000311,XRD,http://purl.enanomapper.org/onto/ENM_8000311,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000312,z-pot,http://purl.enanomapper.org/onto/ENM_8000312,,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000009,surface chemistry assay,http://purl.enanomapper.org/onto/ENM_9000009,,http://purl.obolibrary.org/obo/OBI_0000070,http://purl.enanomapper.org/onto/ENM_9000265,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000011,tumor necrosis factor assay,http://purl.enanomapper.org/onto/ENM_9000011,TNF assay,http://purl.obolibrary.org/obo/OBI_0000070,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000013,WST-1,http://purl.enanomapper.org/onto/ENM_9000013,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000015,Physicochemical Characterization,http://purl.enanomapper.org/onto/ENM_9000015,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000017,DNA Damage Assay,http://purl.enanomapper.org/onto/ENM_9000017,,http://www.bioassayontology.org/bao#BAO_0002167,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000018,Cell Membrane Integrity Assay,http://purl.enanomapper.org/onto/ENM_9000018,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000049,premises identifier,http://purl.enanomapper.org/onto/ENM_9000049,,http://www.bioassayontology.org/bao#BAO_0000520,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000070,measurement identifier,http://purl.enanomapper.org/onto/ENM_9000070,,http://www.bioassayontology.org/bao#BAO_0000520,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000071,sample identifier,http://purl.enanomapper.org/onto/ENM_9000071,,http://www.bioassayontology.org/bao#BAO_0000520,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000265,FRAS,http://purl.enanomapper.org/onto/ENM_9000265,,http://purl.enanomapper.org/onto/ENM_9000009,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000266,WST-8 Cell Proliferation Assay,http://purl.enanomapper.org/onto/ENM_9000266,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000268,Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) assay,http://purl.enanomapper.org/onto/ENM_9000268,,http://www.bioassayontology.org/bao#BAO_0010019,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000269,Bioimpedance assay,http://purl.enanomapper.org/onto/ENM_9000269,,http://www.bioassayontology.org/bao#BAO_0000015,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000015,,http://www.bioassayontology.org/bao#BAO_0000015,,,http://purl.enanomapper.org/onto/ENM_9000269,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000143,,http://www.bioassayontology.org/bao#BAO_0000143,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000190,,http://www.bioassayontology.org/bao#BAO_0000190,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000208,,http://www.bioassayontology.org/bao#BAO_0000208,,,,,,,,http://www.w3.org/2002/07/owl#ObjectProperty,, +http://www.bioassayontology.org/bao#BAO_0000335,,http://www.bioassayontology.org/bao#BAO_0000335,,,,,,,,http://www.w3.org/2002/07/owl#ObjectProperty,, +http://www.bioassayontology.org/bao#BAO_0000435,,http://www.bioassayontology.org/bao#BAO_0000435,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000520,,http://www.bioassayontology.org/bao#BAO_0000520,,,http://purl.enanomapper.org/onto/ENM_9000049|http://purl.enanomapper.org/onto/ENM_9000070|http://purl.enanomapper.org/onto/ENM_9000071,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0002167,,http://www.bioassayontology.org/bao#BAO_0002167,,,http://purl.enanomapper.net/onto/ENM_8100002|http://purl.enanomapper.org/onto/ENM_9000017,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0002168,,http://www.bioassayontology.org/bao#BAO_0002168,,,http://purl.enanomapper.net/onto/ENM_0801504|http://purl.enanomapper.net/onto/ENM_1530072|http://purl.enanomapper.net/onto/ENM_1648790|http://purl.enanomapper.net/onto/ENM_3323768,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0002993,,http://www.bioassayontology.org/bao#BAO_0002993,,,http://purl.enanomapper.net/onto/ENM_5723277|http://purl.enanomapper.org/onto/ENM_8000235,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0003009,,http://www.bioassayontology.org/bao#BAO_0003009,,,http://purl.enanomapper.org/onto/ENM_9000013|http://purl.enanomapper.org/onto/ENM_9000015|http://purl.enanomapper.org/onto/ENM_9000018|http://purl.enanomapper.org/onto/ENM_9000266,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0010019,,http://www.bioassayontology.org/bao#BAO_0010019,,,http://purl.enanomapper.org/onto/ENM_9000268,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0010053,,http://www.bioassayontology.org/bao#BAO_0010053,,,http://purl.enanomapper.net/onto/ENM_1648791,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0080041,,http://www.bioassayontology.org/bao#BAO_0080041,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:isDefinedBy,,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/bioassay.csv b/internal-dev/templates/bioassay.csv deleted file mode 100644 index a37c195b..00000000 --- a/internal-dev/templates/bioassay.csv +++ /dev/null @@ -1,42 +0,0 @@ -ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range -CHMO:0000087,,http://purl.obolibrary.org/obo/CHMO_0000087,,,http://purl.enanomapper.net/onto/ENM_5562662,,,,,http://www.w3.org/2002/07/owl#Class,, -OBI:0000916,,http://purl.obolibrary.org/obo/OBI_0000916,,,http://purl.enanomapper.net/onto/ENM_0801504|http://purl.enanomapper.net/onto/ENM_3323766|http://purl.enanomapper.net/onto/ENM_4869361|http://purl.enanomapper.net/onto/ENM_9802609,,,,,http://www.w3.org/2002/07/owl#Class,, -OBI:0001501,,http://purl.obolibrary.org/obo/OBI_0001501,,,http://purl.enanomapper.net/onto/ENM_3221617,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_0801504,"5(6)-Carboxy-2′,7′-dichlorofluorescein diacetate assay",http://purl.enanomapper.net/onto/ENM_0801504,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_1530072,Thiobarbituric Acid Reactive Substances assay,http://purl.enanomapper.net/onto/ENM_1530072,,http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_1648790,Chemiluminiscence of luminol assay detecting reactive oxygen species ex vivo,http://purl.enanomapper.net/onto/ENM_1648790,,http://www.bioassayontology.org/bao#BAO_0000208 some http://purl.enanomapper.net/onto/ENM_3332709|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_1648791,HPI assay,http://purl.enanomapper.net/onto/ENM_1648791,,http://www.bioassayontology.org/bao#BAO_0010053,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_3221617,H2DCFDA fluorescence assay,http://purl.enanomapper.net/onto/ENM_3221617,,http://purl.obolibrary.org/obo/OBI_0001501|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_3323766,Dihydroethidium flow cytometry assay,http://purl.enanomapper.net/onto/ENM_3323766,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_3323768,Cellular glutathione quantification assay,http://purl.enanomapper.net/onto/ENM_3323768,,http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002168,http://purl.enanomapper.net/onto/ENM_5666044,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_3332709,,http://purl.enanomapper.net/onto/ENM_3332709,,,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_4869361,Dichlorodihydrofluorescein flow cytometry assay,http://purl.enanomapper.net/onto/ENM_4869361,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_5562662,Rhodamine 123 fluorescence microscopy assay,http://purl.enanomapper.net/onto/ENM_5562662,,http://purl.obolibrary.org/obo/CHMO_0000087|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_5666044,MCB cellular GSH quantification assay,http://purl.enanomapper.net/onto/ENM_5666044,,http://purl.enanomapper.net/onto/ENM_3323768,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_5723277,Autophagy assay,http://purl.enanomapper.net/onto/ENM_5723277,,http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143|http://www.bioassayontology.org/bao#BAO_0002993,http://purl.enanomapper.net/onto/ENM_5723278,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_5723278,LC3B II assay,http://purl.enanomapper.net/onto/ENM_5723278,,http://purl.enanomapper.net/onto/ENM_5723277,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_8100001,IC50 (Hill model),http://purl.enanomapper.net/onto/ENM_8100001,,http://www.bioassayontology.org/bao#BAO_0000190 and (http://www.bioassayontology.org/bao#BAO_0000335 some http://www.bioassayontology.org/bao#BAO_0000435),,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_8100002,HPRT - gene mutation base test,http://purl.enanomapper.net/onto/ENM_8100002,,http://www.bioassayontology.org/bao#BAO_0002167,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_9802609,DHR123 flow cytometry assay,http://purl.enanomapper.net/onto/ENM_9802609,,http://purl.obolibrary.org/obo/OBI_0000916|http://www.bioassayontology.org/bao#BAO_0000208 some http://www.bioassayontology.org/bao#BAO_0000143,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_8000235,colony forming efficiency (CFE) assay,http://purl.enanomapper.org/onto/ENM_8000235,,http://www.bioassayontology.org/bao#BAO_0002993,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000013,WST-1,http://purl.enanomapper.org/onto/ENM_9000013,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000015,Physicochemical Characterization,http://purl.enanomapper.org/onto/ENM_9000015,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000017,DNA Damage Assay,http://purl.enanomapper.org/onto/ENM_9000017,,http://www.bioassayontology.org/bao#BAO_0002167,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000018,Cell Membrane Integrity Assay,http://purl.enanomapper.org/onto/ENM_9000018,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000049,premises identifier,http://purl.enanomapper.org/onto/ENM_9000049,,http://www.bioassayontology.org/bao#BAO_0000520,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000070,measurement identifier,http://purl.enanomapper.org/onto/ENM_9000070,,http://www.bioassayontology.org/bao#BAO_0000520,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000071,sample identifier,http://purl.enanomapper.org/onto/ENM_9000071,,http://www.bioassayontology.org/bao#BAO_0000520,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000266,WST-8 Cell Proliferation Assay,http://purl.enanomapper.org/onto/ENM_9000266,,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000268,Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) assay,http://purl.enanomapper.org/onto/ENM_9000268,,http://www.bioassayontology.org/bao#BAO_0010019,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.org/onto/ENM_9000269,Impedance-based cell assay,http://purl.enanomapper.org/onto/ENM_9000269,,http://www.bioassayontology.org/bao#BAO_0000015,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0000015,,http://www.bioassayontology.org/bao#BAO_0000015,,,http://purl.enanomapper.org/onto/ENM_9000269,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0000143,,http://www.bioassayontology.org/bao#BAO_0000143,,,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0000190,,http://www.bioassayontology.org/bao#BAO_0000190,,,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0000435,,http://www.bioassayontology.org/bao#BAO_0000435,,,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0000520,,http://www.bioassayontology.org/bao#BAO_0000520,,,http://purl.enanomapper.org/onto/ENM_9000049|http://purl.enanomapper.org/onto/ENM_9000070|http://purl.enanomapper.org/onto/ENM_9000071,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0002167,,http://www.bioassayontology.org/bao#BAO_0002167,,,http://purl.enanomapper.net/onto/ENM_8100002|http://purl.enanomapper.org/onto/ENM_9000017,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0002168,,http://www.bioassayontology.org/bao#BAO_0002168,,,http://purl.enanomapper.net/onto/ENM_0801504|http://purl.enanomapper.net/onto/ENM_1530072|http://purl.enanomapper.net/onto/ENM_1648790|http://purl.enanomapper.net/onto/ENM_3323768,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0002993,,http://www.bioassayontology.org/bao#BAO_0002993,,,http://purl.enanomapper.net/onto/ENM_5723277|http://purl.enanomapper.org/onto/ENM_8000235,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0003009,,http://www.bioassayontology.org/bao#BAO_0003009,,,http://purl.enanomapper.org/onto/ENM_9000013|http://purl.enanomapper.org/onto/ENM_9000015|http://purl.enanomapper.org/onto/ENM_9000018|http://purl.enanomapper.org/onto/ENM_9000266,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0010019,,http://www.bioassayontology.org/bao#BAO_0010019,,,http://purl.enanomapper.org/onto/ENM_9000268,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0010053,,http://www.bioassayontology.org/bao#BAO_0010053,,,http://purl.enanomapper.net/onto/ENM_1648791,,,,,http://www.w3.org/2002/07/owl#Class,, diff --git a/internal-dev/templates/biological_process.csv b/internal-dev/templates/biological_process.csv index 41acbaaf..75d6b9e9 100644 --- a/internal-dev/templates/biological_process.csv +++ b/internal-dev/templates/biological_process.csv @@ -3,8 +3,13 @@ BFO:0000016,,http://purl.obolibrary.org/obo/BFO_0000016,,,http://purl.enanomappe GO:0002433,,http://purl.obolibrary.org/obo/GO_0002433,,,http://purl.enanomapper.net/onto/ENM_2866079|http://purl.enanomapper.net/onto/ENM_9822611,,,,,http://www.w3.org/2002/07/owl#Class,, GO:0003824,,http://purl.obolibrary.org/obo/GO_0003824,,,http://purl.enanomapper.net/onto/ENM_5865566,,,,,http://www.w3.org/2002/07/owl#Class,, GO:0008150,,http://purl.obolibrary.org/obo/GO_0008150,,,http://purl.enanomapper.net/onto/ENM_9912998,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000115,,http://purl.obolibrary.org/obo/IAO_0000115,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.bioontology.org/ontology/npo#NPO_1597,,http://purl.bioontology.org/ontology/npo#NPO_1597,,,http://purl.enanomapper.net/onto/ENM_2169340,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_2169340,Pathogen-associated molecular patterns,http://purl.enanomapper.net/onto/ENM_2169340,,http://purl.bioontology.org/ontology/npo#NPO_1597,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_2866079,Complement receptor-mediated phagocytic pathway,http://purl.enanomapper.net/onto/ENM_2866079,,http://purl.obolibrary.org/obo/GO_0002433,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_5865566,Cathepsin activity,http://purl.enanomapper.net/onto/ENM_5865566,,http://purl.obolibrary.org/obo/GO_0003824,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_9822611,Mannose receptor-mediated phagocytic pathway,http://purl.enanomapper.net/onto/ENM_9822611,,http://purl.obolibrary.org/obo/GO_0002433,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_9912998,Biodegradation,http://purl.enanomapper.net/onto/ENM_9912998,,http://purl.obolibrary.org/obo/GO_0008150,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_8000316,Photocatalytic activity,http://purl.enanomapper.org/onto/ENM_8000316,,http://purl.obolibrary.org/obo/BFO_0000016,,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/cell_line.csv b/internal-dev/templates/cell_line.csv index c79cb5b9..9596d57f 100644 --- a/internal-dev/templates/cell_line.csv +++ b/internal-dev/templates/cell_line.csv @@ -10,15 +10,24 @@ NCIT:C14238,,http://purl.obolibrary.org/obo/NCIT_C14238,,,http://purl.enanomappe NCIT:C14424,,http://purl.obolibrary.org/obo/NCIT_C14424,,,,,,,,http://www.w3.org/2002/07/owl#Class,, NCIT:C160998,,http://purl.obolibrary.org/obo/NCIT_C160998,,,,,,,,http://www.w3.org/2002/07/owl#Class,, NCIT:C20222,,http://purl.obolibrary.org/obo/NCIT_C20222,,http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C160998,,,,,,http://www.w3.org/2002/07/owl#Class,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, http://purl.enanomapper.net/onto/ENM_0617835,Human mesothelioma cell line,http://purl.enanomapper.net/onto/ENM_0617835,,http://www.ebi.ac.uk/efo/EFO_0001639|http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_0617899,C57BL/6 mouse derived cell line,http://purl.enanomapper.net/onto/ENM_0617899,,http://purl.obolibrary.org/obo/CL_0000010|http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C14424,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://purl.enanomapper.net/onto/ENM_0893129,Murine dendritic cell line,http://purl.enanomapper.net/onto/ENM_0893129,,http://purl.obolibrary.org/obo/BTO_0001034|http://purl.obolibrary.org/obo/BTO_0002042|http://www.ebi.ac.uk/efo/EFO_0002887|http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_0893129,Human PMØ,http://purl.enanomapper.net/onto/ENM_0893129,,http://purl.obolibrary.org/obo/BTO_0001034|http://purl.obolibrary.org/obo/BTO_0002042|http://www.ebi.ac.uk/efo/EFO_0002887|http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_0951914,Lung cell line,http://purl.enanomapper.net/onto/ENM_0951914,,http://purl.obolibrary.org/obo/CL_0000010|http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/BTO_0000763,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1850054,cell type,http://purl.enanomapper.net/onto/ENM_1850054,,http://semanticscience.org/resource/SIO_000476,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1905906,organ quality,http://purl.enanomapper.net/onto/ENM_1905906,,http://semanticscience.org/resource/SIO_000475,http://purl.enanomapper.net/onto/ENM_9019379,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_1905911,has_qualifier,http://purl.enanomapper.net/onto/ENM_1905911,,,,,,,,http://www.w3.org/2002/07/owl#DatatypeProperty,, http://purl.enanomapper.net/onto/ENM_2659304,HsdOla:TO mouse,http://purl.enanomapper.net/onto/ENM_2659304,,http://purl.obolibrary.org/obo/NCIT_C14238,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_2866074,Mouse platelets,http://purl.enanomapper.net/onto/ENM_2866074,,http://purl.obolibrary.org/obo/CL_0000233|http://www.ebi.ac.uk/efo/EFO_0001643|http://www.ebi.ac.uk/efo/EFO_0002887|http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_7054247,CCL-131,http://purl.enanomapper.net/onto/ENM_7054247,,http://www.ebi.ac.uk/efo/EFO_0002887|http://www.ebi.ac.uk/efo/EFO_0005214,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_9019379,organ type,http://purl.enanomapper.net/onto/ENM_9019379,,http://purl.enanomapper.net/onto/ENM_1905906,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://semanticscience.org/resource/SIO_000475,,http://semanticscience.org/resource/SIO_000475,,,http://purl.enanomapper.net/onto/ENM_1905906,,,,,http://www.w3.org/2002/07/owl#Class,, +http://semanticscience.org/resource/SIO_000476,,http://semanticscience.org/resource/SIO_000476,,,http://purl.enanomapper.net/onto/ENM_1850054,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0090006,,http://www.bioassayontology.org/bao#BAO_0090006,,,,,,,,http://www.w3.org/2002/07/owl#ObjectProperty,, http://www.ebi.ac.uk/efo/EFO_0001639,,http://www.ebi.ac.uk/efo/EFO_0001639,,,http://purl.enanomapper.net/onto/ENM_0617835,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.ebi.ac.uk/efo/EFO_0001643,,http://www.ebi.ac.uk/efo/EFO_0001643,,,http://purl.enanomapper.net/onto/ENM_2866074,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.ebi.ac.uk/efo/EFO_0002887,,http://www.ebi.ac.uk/efo/EFO_0002887,,,http://purl.enanomapper.net/onto/ENM_0893129|http://purl.enanomapper.net/onto/ENM_2866074|http://purl.enanomapper.net/onto/ENM_7054247,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.ebi.ac.uk/efo/EFO_0002888,,http://www.ebi.ac.uk/efo/EFO_0002888,,,http://purl.enanomapper.net/onto/ENM_0617835|http://purl.enanomapper.net/onto/ENM_0893129|http://purl.enanomapper.net/onto/ENM_2866074,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.ebi.ac.uk/efo/EFO_0005214,,http://www.ebi.ac.uk/efo/EFO_0005214,,,http://purl.enanomapper.net/onto/ENM_7054247,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/chemical_entities.csv b/internal-dev/templates/chemical_entities.csv index 2a0094fa..11cf3dce 100644 --- a/internal-dev/templates/chemical_entities.csv +++ b/internal-dev/templates/chemical_entities.csv @@ -7,6 +7,8 @@ CHEBI:52855,,http://purl.obolibrary.org/obo/CHEBI_52855,,,http://purl.enanomappe CHEBI:60004,,http://purl.obolibrary.org/obo/CHEBI_60004,,,http://purl.enanomapper.net/onto/ENM_9116388,,,,,http://www.w3.org/2002/07/owl#Class,, ENVO:01000508,,http://purl.obolibrary.org/obo/ENVO_01000508,,,http://purl.enanomapper.org/onto/ENM_8000240,,,,,http://www.w3.org/2002/07/owl#Class,, ENVO:01000845,,http://purl.obolibrary.org/obo/ENVO_01000845,,,http://purl.enanomapper.org/onto/ENM_8000245|http://purl.enanomapper.org/onto/ENM_8000314|http://purl.enanomapper.org/onto/ENM_8000315,,,,,http://www.w3.org/2002/07/owl#Class,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:license,,http://purl.org/dc/elements/1.1/license,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, http://purl.bioontology.org/ontology/npo#NPO_1486,,http://purl.bioontology.org/ontology/npo#NPO_1486,,,http://purl.enanomapper.org/onto/ENM_8000314|http://purl.enanomapper.org/onto/ENM_8000315,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_9116388,CeO2/Co3O4 nanoparticle,http://purl.enanomapper.net/onto/ENM_9116388,,http://purl.enanomapper.org/onto/ENM_9000006|http://purl.enanomapper.org/onto/ENM_9000248|http://purl.obolibrary.org/obo/CHEBI_60004,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_0000073,extractant,http://purl.enanomapper.org/onto/ENM_0000073,,http://purl.obolibrary.org/obo/CHEBI_51086,,,,,,http://www.w3.org/2002/07/owl#Class,, @@ -121,3 +123,7 @@ http://purl.enanomapper.org/onto/ENM_9000026,fullerenol nanoparticle,http://purl http://purl.enanomapper.org/onto/ENM_9000028,tricalcium phosphate nanoparticle,http://purl.enanomapper.org/onto/ENM_9000028,,http://purl.obolibrary.org/obo/CHEBI_52855,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_9000099,,http://purl.enanomapper.org/onto/ENM_9000099,,,http://purl.enanomapper.org/onto/ENM_8000234,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_9000248,,http://purl.enanomapper.org/onto/ENM_9000248,,,http://purl.enanomapper.net/onto/ENM_9116388,,,,,http://www.w3.org/2002/07/owl#Class,, +obo:chebi/formula,,http://purl.obolibrary.org/obo/chebi/formula,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:comment,,http://www.w3.org/2000/01/rdf-schema#comment,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:isDefinedBy,,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/chemical_methods.csv b/internal-dev/templates/chemical_methods.csv index f1d56496..c9219508 100644 --- a/internal-dev/templates/chemical_methods.csv +++ b/internal-dev/templates/chemical_methods.csv @@ -1,6 +1,10 @@ ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range CHMO:0000538,,http://purl.obolibrary.org/obo/CHMO_0000538,,,http://purl.enanomapper.org/onto/ENM_0000108,,,,,http://www.w3.org/2002/07/owl#Class,, CHMO:0001075,,http://purl.obolibrary.org/obo/CHMO_0001075,,,http://purl.enanomapper.org/onto/ENM_8000255|http://purl.enanomapper.org/onto/ENM_8000256,,,,,http://www.w3.org/2002/07/owl#Class,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:license,,http://purl.org/dc/elements/1.1/license,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, http://purl.enanomapper.org/onto/ENM_0000108,Time resolved Single Particle Inductively Coupled Plasma Mass Spectrometry,http://purl.enanomapper.org/onto/ENM_0000108,,http://purl.obolibrary.org/obo/CHMO_0000538,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_8000255,ICP-MS,http://purl.enanomapper.org/onto/ENM_8000255,,http://purl.obolibrary.org/obo/CHMO_0001075,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_8000256,CHN analysis,http://purl.enanomapper.org/onto/ENM_8000256,,http://purl.obolibrary.org/obo/CHMO_0001075,,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:comment,,http://www.w3.org/2000/01/rdf-schema#comment,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/computational_methods.csv b/internal-dev/templates/computational_methods.csv new file mode 100644 index 00000000..ffe70eb4 --- /dev/null +++ b/internal-dev/templates/computational_methods.csv @@ -0,0 +1,95 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +IAO:0000027,,http://purl.obolibrary.org/obo/IAO_0000027,,,http://purl.enanomapper.org/onto/ENM_8000021,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000030,,http://purl.obolibrary.org/obo/IAO_0000030,,,http://purl.enanomapper.org/onto/ENM_8000073|http://purl.enanomapper.org/onto/ENM_8000313,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000064,,http://purl.obolibrary.org/obo/IAO_0000064,,,http://purl.enanomapper.org/onto/ENM_8000001,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000115,,http://purl.obolibrary.org/obo/IAO_0000115,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.bioontology.org/ontology/npo#NPO_1697,,http://purl.bioontology.org/ontology/npo#NPO_1697,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_1200002,PubMedCentral Identifier (PMCID),http://purl.enanomapper.org/onto/ENM_1200002,,http://semanticscience.org/resource/CHEMINF_000464,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000001,algorithm type,http://purl.enanomapper.org/onto/ENM_8000001,,http://purl.obolibrary.org/obo/IAO_0000064,http://purl.enanomapper.org/onto/ENM_8000002|http://purl.enanomapper.org/onto/ENM_8000003|http://purl.enanomapper.org/onto/ENM_8000026,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000002,Supervised learning,http://purl.enanomapper.org/onto/ENM_8000002,,http://purl.enanomapper.org/onto/ENM_8000001,http://purl.enanomapper.org/onto/ENM_8000004|http://purl.enanomapper.org/onto/ENM_8000005,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000003,Unsupervised Learning,http://purl.enanomapper.org/onto/ENM_8000003,,http://purl.enanomapper.org/onto/ENM_8000001,http://purl.enanomapper.org/onto/ENM_8000006,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000004,regression,http://purl.enanomapper.org/onto/ENM_8000004,,http://purl.enanomapper.org/onto/ENM_8000002,http://purl.enanomapper.org/onto/ENM_8000016|http://purl.enanomapper.org/onto/ENM_8000017|http://purl.enanomapper.org/onto/ENM_8000024,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000005,classification,http://purl.enanomapper.org/onto/ENM_8000005,,http://purl.enanomapper.org/onto/ENM_8000002,http://purl.enanomapper.org/onto/ENM_8000014|http://purl.enanomapper.org/onto/ENM_8000015,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000006,clustering,http://purl.enanomapper.org/onto/ENM_8000006,,http://purl.enanomapper.org/onto/ENM_8000003,http://purl.enanomapper.org/onto/ENM_8000007|http://purl.enanomapper.org/onto/ENM_8000008|http://purl.enanomapper.org/onto/ENM_8000009,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000007,agglomeration clustering methodologies,http://purl.enanomapper.org/onto/ENM_8000007,,http://purl.enanomapper.org/onto/ENM_8000006,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000008,biclustering,http://purl.enanomapper.org/onto/ENM_8000008,,http://purl.enanomapper.org/onto/ENM_8000006,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000009,Hierarchical clustering is a set of nested clusters that are organized as a tree (source: https://www-users.cs.umn.edu/~kumar/dmbook/ch8.pdf).,http://purl.enanomapper.org/onto/ENM_8000009,,http://purl.enanomapper.org/onto/ENM_8000006,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000010,bernoulli naive bayes,http://purl.enanomapper.org/onto/ENM_8000010,,http://purl.enanomapper.org/onto/ENM_8000014,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000011,generalised naive bayes,http://purl.enanomapper.org/onto/ENM_8000011,,http://purl.enanomapper.org/onto/ENM_8000014,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000012,multinomial naive bayes,http://purl.enanomapper.org/onto/ENM_8000012,,http://purl.enanomapper.org/onto/ENM_8000014,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000013,numeric data entry,http://purl.enanomapper.org/onto/ENM_8000013,,http://purl.enanomapper.org/onto/ENM_8000021,http://purl.enanomapper.org/onto/ENM_8000096,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000014,model-based classification,http://purl.enanomapper.org/onto/ENM_8000014,,http://purl.enanomapper.org/onto/ENM_8000005,http://purl.enanomapper.org/onto/ENM_8000010|http://purl.enanomapper.org/onto/ENM_8000011|http://purl.enanomapper.org/onto/ENM_8000012|http://purl.enanomapper.org/onto/ENM_8000018|http://purl.enanomapper.org/onto/ENM_8000065|http://purl.enanomapper.org/onto/ENM_8000091,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000015,instance-based classification,http://purl.enanomapper.org/onto/ENM_8000015,,http://purl.enanomapper.org/onto/ENM_8000005,http://purl.enanomapper.org/onto/ENM_8000074,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000016,instance-based regression,http://purl.enanomapper.org/onto/ENM_8000016,,http://purl.enanomapper.org/onto/ENM_8000004,http://purl.enanomapper.org/onto/ENM_8000122,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000017,model-based regression,http://purl.enanomapper.org/onto/ENM_8000017,,http://purl.enanomapper.org/onto/ENM_8000004,http://purl.enanomapper.org/onto/ENM_8000025|http://purl.enanomapper.org/onto/ENM_8000092|http://purl.enanomapper.org/onto/ENM_8000093|http://purl.enanomapper.org/onto/ENM_8000094,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000018,artificial neural network classification,http://purl.enanomapper.org/onto/ENM_8000018,,http://purl.enanomapper.org/onto/ENM_8000014,http://purl.enanomapper.org/onto/ENM_8000121,,,,,http://www.w3.org/2002/07/owl#Class,, 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+http://purl.enanomapper.org/onto/ENM_8000097,normalization,http://purl.enanomapper.org/onto/ENM_8000097,,http://purl.enanomapper.org/onto/ENM_8000077,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000098,scaling,http://purl.enanomapper.org/onto/ENM_8000098,,http://purl.enanomapper.org/onto/ENM_8000077,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000099,chemical hardness,http://purl.enanomapper.org/onto/ENM_8000099,,http://purl.enanomapper.org/onto/ENM_8000027,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000100,conduction band,http://purl.enanomapper.org/onto/ENM_8000100,,http://purl.enanomapper.org/onto/ENM_8000027,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000112,external validation,http://purl.enanomapper.org/onto/ENM_8000112,,http://purl.enanomapper.org/onto/ENM_8000080,,,,,,http://www.w3.org/2002/07/owl#Class,, 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+http://purl.enanomapper.org/onto/ENM_9000017,,http://purl.enanomapper.org/onto/ENM_9000017,,,http://purl.enanomapper.org/onto/ENM_8000249,,,,,http://www.w3.org/2002/07/owl#Class,, +http://semanticscience.org/resource/CHEMINF_000464,,http://semanticscience.org/resource/CHEMINF_000464,,,http://purl.enanomapper.org/onto/ENM_1200002,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:comment,,http://www.w3.org/2000/01/rdf-schema#comment,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:isDefinedBy,,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/endpoints.csv b/internal-dev/templates/endpoints.csv index b0f6e541..e8675891 100644 --- a/internal-dev/templates/endpoints.csv +++ b/internal-dev/templates/endpoints.csv @@ -1,7 +1,12 @@ ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +IAO:0000115,,http://purl.obolibrary.org/obo/IAO_0000115,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +IAO:0000118,,http://purl.obolibrary.org/obo/IAO_0000118,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +IAO:0000119,,http://purl.obolibrary.org/obo/IAO_0000119,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, http://purl.bioontology.org/ontology/npo#NPO_1338,,http://purl.bioontology.org/ontology/npo#NPO_1338,,http://purl.enanomapper.org/onto/ENM_0000018,http://purl.enanomapper.org/onto/ENM_0000001|http://purl.enanomapper.org/onto/ENM_0000019|http://purl.enanomapper.org/onto/ENM_0000022|http://purl.enanomapper.org/onto/ENM_0000025|http://purl.enanomapper.org/onto/ENM_0000028|http://purl.enanomapper.org/onto/ENM_0000029|http://purl.enanomapper.org/onto/ENM_0000030|http://purl.enanomapper.org/onto/ENM_0000050,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_0295914,Mitochondrial membrane potential endpoint,http://purl.enanomapper.net/onto/ENM_0295914,,http://purl.enanomapper.org/onto/ENM_0000063,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_3332709,Peroxynitrite-induced luminol chemiluminiscence,http://purl.enanomapper.net/onto/ENM_3332709,,http://purl.enanomapper.org/onto/ENM_0000037,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5933788,BET surface area endpoint,http://purl.enanomapper.net/onto/ENM_5933788,,http://semanticscience.org/resource/CHEMINF_000247,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_7011632,Cellular glutathione content,http://purl.enanomapper.net/onto/ENM_7011632,,http://purl.enanomapper.org/onto/ENM_0000037,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_8553741,nanoparticle uptake efficiency endpoint,http://purl.enanomapper.net/onto/ENM_8553741,,http://purl.enanomapper.org/onto/ENM_0000045|http://www.bioassayontology.org/bao#BAO_0002752|http://www.bioassayontology.org/bao#BAO_0080042,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_0000001,environmental toxicity,http://purl.enanomapper.org/onto/ENM_0000001,,http://purl.bioontology.org/ontology/npo#NPO_1338,http://purl.enanomapper.org/onto/ENM_0000002|http://purl.enanomapper.org/onto/ENM_0000003|http://purl.enanomapper.org/onto/ENM_0000007|http://purl.enanomapper.org/onto/ENM_0000009|http://purl.enanomapper.org/onto/ENM_0000012|http://purl.enanomapper.org/onto/ENM_0000014|http://purl.enanomapper.org/onto/ENM_0000015,,,,,http://www.w3.org/2002/07/owl#Class,, @@ -91,9 +96,14 @@ http://purl.enanomapper.org/onto/ENM_0000091,VSSA,http://purl.enanomapper.org/on http://purl.enanomapper.org/onto/ENM_0000092,zeta potential,http://purl.enanomapper.org/onto/ENM_0000092,,http://www.bioassayontology.org/bao#BAO_0002128,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_0000093,effective density,http://purl.enanomapper.org/onto/ENM_0000093,,http://purl.enanomapper.org/onto/ENM_0000084,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_8100000,LOEC,http://purl.enanomapper.org/onto/ENM_8100000,lowest observed effects concentration,http://www.bioassayontology.org/bao#BAO_0002162,,,,,,http://www.w3.org/2002/07/owl#Class,, -http://www.bioassayontology.org/bao#BAO_0000179,,http://www.bioassayontology.org/bao#BAO_0000179,,,http://purl.enanomapper.org/onto/ENM_0000035|http://purl.enanomapper.org/onto/ENM_0000038|http://purl.enanomapper.org/onto/ENM_0000043,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000072,solubility endpoint,http://purl.enanomapper.org/onto/ENM_9000072,,http://www.bioassayontology.org/bao#BAO_0000179,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://semanticscience.org/resource/CHEMINF_000247,,http://semanticscience.org/resource/CHEMINF_000247,,,http://purl.enanomapper.net/onto/ENM_5933788,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000179,,http://www.bioassayontology.org/bao#BAO_0000179,,,http://purl.enanomapper.org/onto/ENM_0000035|http://purl.enanomapper.org/onto/ENM_0000038|http://purl.enanomapper.org/onto/ENM_0000043|http://purl.enanomapper.org/onto/ENM_9000072,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.bioassayontology.org/bao#BAO_0000181,,http://www.bioassayontology.org/bao#BAO_0000181,,,http://purl.enanomapper.org/onto/ENM_0000036|http://purl.enanomapper.org/onto/ENM_0000056|http://purl.enanomapper.org/onto/ENM_0000057|http://purl.enanomapper.org/onto/ENM_0000058|http://purl.enanomapper.org/onto/ENM_0000059,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.bioassayontology.org/bao#BAO_0002128,,http://www.bioassayontology.org/bao#BAO_0002128,,http://purl.enanomapper.org/onto/ENM_0000035,http://purl.enanomapper.org/onto/ENM_0000062|http://purl.enanomapper.org/onto/ENM_0000066|http://purl.enanomapper.org/onto/ENM_0000069|http://purl.enanomapper.org/onto/ENM_0000070|http://purl.enanomapper.org/onto/ENM_0000077|http://purl.enanomapper.org/onto/ENM_0000078|http://purl.enanomapper.org/onto/ENM_0000081|http://purl.enanomapper.org/onto/ENM_0000084|http://purl.enanomapper.org/onto/ENM_0000085|http://purl.enanomapper.org/onto/ENM_0000086|http://purl.enanomapper.org/onto/ENM_0000087|http://purl.enanomapper.org/onto/ENM_0000088|http://purl.enanomapper.org/onto/ENM_0000091|http://purl.enanomapper.org/onto/ENM_0000092,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.bioassayontology.org/bao#BAO_0002162,,http://www.bioassayontology.org/bao#BAO_0002162,,,http://purl.enanomapper.org/onto/ENM_0000051|http://purl.enanomapper.org/onto/ENM_0000052|http://purl.enanomapper.org/onto/ENM_0000053|http://purl.enanomapper.org/onto/ENM_0000054|http://purl.enanomapper.org/onto/ENM_0000055|http://purl.enanomapper.org/onto/ENM_0000060|http://purl.enanomapper.org/onto/ENM_8100000,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.bioassayontology.org/bao#BAO_0002752,,http://www.bioassayontology.org/bao#BAO_0002752,,,http://purl.enanomapper.net/onto/ENM_8553741,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.bioassayontology.org/bao#BAO_0080042,,http://www.bioassayontology.org/bao#BAO_0080042,,,http://purl.enanomapper.net/onto/ENM_8553741,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:comment,,http://www.w3.org/2000/01/rdf-schema#comment,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:isDefinedBy,,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/enms.csv b/internal-dev/templates/enms.csv index 81c34725..c643bf06 100644 --- a/internal-dev/templates/enms.csv +++ b/internal-dev/templates/enms.csv @@ -10,6 +10,9 @@ CHEBI:37196,,http://purl.obolibrary.org/obo/CHEBI_37196,,,,,,,,http://www.w3.org CHEBI:37217,,http://purl.obolibrary.org/obo/CHEBI_37217,,,,,,,,http://www.w3.org/2002/07/owl#Class,, CHEBI:53374,,http://purl.obolibrary.org/obo/CHEBI_53374,,,,,,,,http://www.w3.org/2002/07/owl#Class,, CHEBI:82283,,http://purl.obolibrary.org/obo/CHEBI_82283,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000115,,http://purl.obolibrary.org/obo/IAO_0000115,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +IAO:0000118,,http://purl.obolibrary.org/obo/IAO_0000118,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +IAO:0000119,,http://purl.obolibrary.org/obo/IAO_0000119,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, NCIT:C54072,,http://purl.obolibrary.org/obo/NCIT_C54072,,,http://purl.enanomapper.net/onto/ENM_7849436|http://purl.enanomapper.net/onto/ENM_9915100,,,,,http://www.w3.org/2002/07/owl#Class,, NCIT:C62365,,http://purl.obolibrary.org/obo/NCIT_C62365,,,http://purl.enanomapper.net/onto/ENM_0218062,,,,,http://www.w3.org/2002/07/owl#Class,, OBI:0000070,,http://purl.obolibrary.org/obo/OBI_0000070,,,http://purl.enanomapper.net/onto/ENM_3323767,,,,,http://www.w3.org/2002/07/owl#Class,, @@ -39,6 +42,7 @@ http://purl.bioontology.org/ontology/npo#NPO_1999,,http://purl.bioontology.org/o http://purl.bioontology.org/ontology/npo#NPO_354,,http://purl.bioontology.org/ontology/npo#NPO_354,,,http://purl.enanomapper.org/onto/ENM_9000080|http://purl.enanomapper.org/onto/ENM_9000081|http://purl.enanomapper.org/onto/ENM_9000206|http://purl.enanomapper.org/onto/ENM_9000207|http://purl.enanomapper.org/onto/ENM_9000216|http://purl.enanomapper.org/onto/ENM_9000217|http://purl.enanomapper.org/onto/ENM_9000218|http://purl.enanomapper.org/onto/ENM_9000219|http://purl.enanomapper.org/onto/ENM_9000220|http://purl.enanomapper.org/onto/ENM_9000221|http://purl.enanomapper.org/onto/ENM_9000222|http://purl.enanomapper.org/onto/ENM_9000223|http://purl.enanomapper.org/onto/ENM_9000224|http://purl.enanomapper.org/onto/ENM_9000225|http://purl.enanomapper.org/onto/ENM_9000229|http://purl.enanomapper.org/onto/ENM_9000230|http://purl.enanomapper.org/onto/ENM_9000239,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.bioontology.org/ontology/npo#NPO_401,,http://purl.bioontology.org/ontology/npo#NPO_401,,,http://purl.enanomapper.org/onto/ENM_9000097|http://purl.enanomapper.org/onto/ENM_9000098|http://purl.enanomapper.org/onto/ENM_9000216|http://purl.enanomapper.org/onto/ENM_9000217,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.bioontology.org/ontology/npo#NPO_707,,http://purl.bioontology.org/ontology/npo#NPO_707,,,http://purl.enanomapper.org/onto/ENM_0000117|http://purl.enanomapper.org/onto/ENM_9000007|http://purl.enanomapper.org/onto/ENM_9000008|http://purl.enanomapper.org/onto/ENM_9000240|http://purl.enanomapper.org/onto/ENM_9000246|http://purl.enanomapper.org/onto/ENM_9000249|http://purl.enanomapper.org/onto/ENM_9000256|http://purl.enanomapper.org/onto/ENM_9000257,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.bioontology.org/ontology/npo#has_component_part,,http://purl.bioontology.org/ontology/npo#has_component_part,,,,,,,,http://www.w3.org/2002/07/owl#ObjectProperty,, http://purl.enanomapper.net/onto/ENM_0218062,TiO2@SiO2 nanocomposite,http://purl.enanomapper.net/onto/ENM_0218062,,http://purl.bioontology.org/ontology/npo#NPO_1373|http://purl.bioontology.org/ontology/npo#NPO_1486|http://purl.obolibrary.org/obo/NCIT_C62365,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_0298514,Ion leakage,http://purl.enanomapper.net/onto/ENM_0298514,,http://purl.bioontology.org/ontology/npo#NPO_1964,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_0468307,Carboxy-functionalization of a nanoparticle,http://purl.enanomapper.net/onto/ENM_0468307,,http://purl.bioontology.org/ontology/npo#NPO_1883,,,,,,http://www.w3.org/2002/07/owl#Class,, @@ -60,6 +64,10 @@ http://purl.enanomapper.net/onto/ENM_9010524,Embedding into nano-enabled paint f http://purl.enanomapper.net/onto/ENM_9318045,Carbon-carbon-functionalization of a nanoparticle,http://purl.enanomapper.net/onto/ENM_9318045,,http://purl.bioontology.org/ontology/npo#NPO_1883,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_9769969,eco-corona,http://purl.enanomapper.net/onto/ENM_9769969,,http://purl.enanomapper.org/onto/ENM_0000115,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_9915100,Crystalline state stability,http://purl.enanomapper.net/onto/ENM_9915100,,http://purl.obolibrary.org/obo/NCIT_C54072,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/internal/npo-ext.owl#code,,http://purl.enanomapper.net/onto/internal/npo-ext.owl#code,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.net/onto/internal/npo-ext.owl#preferred_Name,,http://purl.enanomapper.net/onto/internal/npo-ext.owl#preferred_Name,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.net/onto/internal/npo-ext.owl#synonym,,http://purl.enanomapper.net/onto/internal/npo-ext.owl#synonym,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.net/onto/internal/npo-ext.owl/synonym,,http://purl.enanomapper.net/onto/internal/npo-ext.owl/synonym,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, http://purl.enanomapper.org/onto//ENM_0000074,Mastersizer,http://purl.enanomapper.org/onto//ENM_0000074,,http://purl.bioontology.org/ontology/npo#NPO_1436,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto//ENM_0000075,Malvern Zetasizer,http://purl.enanomapper.org/onto//ENM_0000075,,http://purl.bioontology.org/ontology/npo#NPO_1436,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_0000064,Brunauer–Emmett–Teller analysis,http://purl.enanomapper.org/onto/ENM_0000064,,http://purl.bioontology.org/ontology/npo#NPO_1405,,,,,,http://www.w3.org/2002/07/owl#Class,, @@ -330,6 +338,13 @@ http://purl.enanomapper.org/onto/ENM_9000254,cobalt oxide nanoparticle,http://pu http://purl.enanomapper.org/onto/ENM_9000255,JRCNM03000a,http://purl.enanomapper.org/onto/ENM_9000255,,http://purl.bioontology.org/ontology/npo#NPO_1892,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_9000256,JRCNM50001a,http://purl.enanomapper.org/onto/ENM_9000256,,http://purl.bioontology.org/ontology/npo#NPO_707,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_9000257,tungsten carbide nanoparticle,http://purl.enanomapper.org/onto/ENM_9000257,,http://purl.bioontology.org/ontology/npo#NPO_707,,http://purl.bioontology.org/ontology/npo#NPO_707 and (http://purl.bioontology.org/ontology/npo#has_component_part some http://purl.obolibrary.org/obo/CHEBI_82283),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/internal/npo-ext.owl#code,,http://purl.enanomapper.org/onto/internal/npo-ext.owl#code,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.org/onto/internal/npo-ext.owl#preferred_Name,,http://purl.enanomapper.org/onto/internal/npo-ext.owl#preferred_Name,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.org/onto/internal/npo-ext.owl#synonym,,http://purl.enanomapper.org/onto/internal/npo-ext.owl#synonym,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, http://semanticscience.org/resource/CHEMINF_000247,,http://semanticscience.org/resource/CHEMINF_000247,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0000208,,http://www.bioassayontology.org/bao#BAO_0000208,,,,,,,,http://www.w3.org/2002/07/owl#ObjectProperty,, http://www.bioassayontology.org/bao#BAO_0002775,aqueous solubility,http://www.bioassayontology.org/bao#BAO_0002775,,http://purl.enanomapper.org/onto/ENM_9000072,,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.bioassayontology.org/bao#BAO_0003009,BAO_0003009,http://www.bioassayontology.org/bao#BAO_0003009,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:comment,,http://www.w3.org/2000/01/rdf-schema#comment,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:isDefinedBy,,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/experimental_factors.csv b/internal-dev/templates/experimental_factors.csv index e22ade1c..d28d1b0e 100644 --- a/internal-dev/templates/experimental_factors.csv +++ b/internal-dev/templates/experimental_factors.csv @@ -1,15 +1,38 @@ ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range BTO:0000018,,http://purl.obolibrary.org/obo/BTO_0000018,,http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000115,,http://purl.obolibrary.org/obo/IAO_0000115,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, NCIT:C119826,,http://purl.obolibrary.org/obo/NCIT_C119826,,,http://purl.enanomapper.org/onto/ENM_9000267,,,,,http://www.w3.org/2002/07/owl#Class,, +NCIT:C12428,,http://purl.obolibrary.org/obo/NCIT_C12428,,,,,,,,http://www.w3.org/2002/07/owl#Class,, NCIT:C14225,,http://purl.obolibrary.org/obo/NCIT_C14225,,,,,,,,http://www.w3.org/2002/07/owl#Class,, NCIT:C14238,,http://purl.obolibrary.org/obo/NCIT_C14238,,,,,,,,http://www.w3.org/2002/07/owl#Class,, NCIT:C160998,,http://purl.obolibrary.org/obo/NCIT_C160998,,,,,,,,http://www.w3.org/2002/07/owl#Class,, NCIT:C53414,,http://purl.obolibrary.org/obo/NCIT_C53414,,,http://purl.enanomapper.net/onto/ENM_2169340,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0000954,,http://purl.obolibrary.org/obo/OBI_0000954,,,http://purl.enanomapper.net/onto/ENM_4399735,,,,,http://www.w3.org/2002/07/owl#Class,, +OBI:0600007,,http://purl.obolibrary.org/obo/OBI_0600007,,,http://purl.enanomapper.net/onto/ENM_3323761,,,,,http://www.w3.org/2002/07/owl#Class,, +PATO:0000033,,http://purl.obolibrary.org/obo/PATO_0000033,,,http://purl.enanomapper.org/onto/ENM_0000105,,,,,http://www.w3.org/2002/07/owl#Class,, +PATO:0000161,,http://purl.obolibrary.org/obo/PATO_0000161,,,http://purl.enanomapper.org/onto/ENM_0000110|http://purl.enanomapper.org/onto/ENM_0000111,,,,,http://www.w3.org/2002/07/owl#Class,, +PATO:0050001,,http://purl.obolibrary.org/obo/PATO_0050001,,,http://purl.enanomapper.org/onto/ENM_1200001,,,,,http://www.w3.org/2002/07/owl#Class,, +RO:0002339,,http://purl.obolibrary.org/obo/RO_0002339,,,,,,,,http://www.w3.org/2002/07/owl#ObjectProperty,, +RO:0016004,,http://purl.obolibrary.org/obo/RO_0016004,,,,,,,,http://www.w3.org/2002/07/owl#ObjectProperty,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:license,,http://purl.org/dc/elements/1.1/license,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.bioontology.org/ontology/npo#NPO_771,,http://purl.bioontology.org/ontology/npo#NPO_771,,,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.net/onto/ENM_2169340,Organic matter in medium,http://purl.enanomapper.net/onto/ENM_2169340,,http://purl.obolibrary.org/obo/NCIT_C53414,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3323761,Instillation,http://purl.enanomapper.net/onto/ENM_3323761,,http://purl.obolibrary.org/obo/OBI_0600007,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3323767,,http://purl.enanomapper.net/onto/ENM_3323767,,,http://purl.enanomapper.net/onto/ENM_5945718,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_4399735,subcutaneous injection via hydrogel,http://purl.enanomapper.net/onto/ENM_4399735,,http://purl.obolibrary.org/obo/OBI_0000954|http://purl.obolibrary.org/obo/RO_0016004 some http://purl.bioontology.org/ontology/npo#NPO_771,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_5945718,Tracheal instillation,http://purl.enanomapper.net/onto/ENM_5945718,,http://purl.enanomapper.net/onto/ENM_3323767|http://purl.obolibrary.org/obo/RO_0002339 some http://purl.obolibrary.org/obo/NCIT_C12428,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000105,Chloride concentration,http://purl.enanomapper.org/onto/ENM_0000105,,http://purl.obolibrary.org/obo/PATO_0000033,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000110,Deposition rate,http://purl.enanomapper.org/onto/ENM_0000110,,http://purl.obolibrary.org/obo/PATO_0000161,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_0000111,Homoaggregation rate,http://purl.enanomapper.org/onto/ENM_0000111,,http://purl.obolibrary.org/obo/PATO_0000161,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_1200001,Dissolution rate,http://purl.enanomapper.org/onto/ENM_1200001,,http://purl.obolibrary.org/obo/PATO_0050001,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_9000267,Pulmonary instillation,http://purl.enanomapper.org/onto/ENM_9000267,,http://purl.obolibrary.org/obo/NCIT_C119826,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0090006,,http://www.bioassayontology.org/bao#BAO_0090006,,,,,,,,http://www.w3.org/2002/07/owl#ObjectProperty,, http://www.ebi.ac.uk/efo/EFO_0001089,,http://www.ebi.ac.uk/efo/EFO_0001089,,http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.ebi.ac.uk/efo/EFO_0001193,,http://www.ebi.ac.uk/efo/EFO_0001193,,http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.ebi.ac.uk/efo/EFO_0002779,,http://www.ebi.ac.uk/efo/EFO_0002779,,http://www.ebi.ac.uk/efo/EFO_0002888,,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.ebi.ac.uk/efo/EFO_0002887,,http://www.ebi.ac.uk/efo/EFO_0002887,,http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C14238,,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.ebi.ac.uk/efo/EFO_0002888,,http://www.ebi.ac.uk/efo/EFO_0002888,,http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C14225,http://purl.obolibrary.org/obo/BTO_0000018|http://www.ebi.ac.uk/efo/EFO_0001089|http://www.ebi.ac.uk/efo/EFO_0001193|http://www.ebi.ac.uk/efo/EFO_0002779,,,,,http://www.w3.org/2002/07/owl#Class,, http://www.ebi.ac.uk/efo/EFO_0002936,,http://www.ebi.ac.uk/efo/EFO_0002936,,http://www.bioassayontology.org/bao#BAO_0090006 some http://purl.obolibrary.org/obo/NCIT_C160998,,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:isDefinedBy,,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/information_content.csv b/internal-dev/templates/information_content.csv new file mode 100644 index 00000000..ffe70eb4 --- /dev/null +++ b/internal-dev/templates/information_content.csv @@ -0,0 +1,95 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +IAO:0000027,,http://purl.obolibrary.org/obo/IAO_0000027,,,http://purl.enanomapper.org/onto/ENM_8000021,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000030,,http://purl.obolibrary.org/obo/IAO_0000030,,,http://purl.enanomapper.org/onto/ENM_8000073|http://purl.enanomapper.org/onto/ENM_8000313,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000064,,http://purl.obolibrary.org/obo/IAO_0000064,,,http://purl.enanomapper.org/onto/ENM_8000001,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000115,,http://purl.obolibrary.org/obo/IAO_0000115,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.bioontology.org/ontology/npo#NPO_1697,,http://purl.bioontology.org/ontology/npo#NPO_1697,,,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_1200002,PubMedCentral Identifier (PMCID),http://purl.enanomapper.org/onto/ENM_1200002,,http://semanticscience.org/resource/CHEMINF_000464,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000001,algorithm type,http://purl.enanomapper.org/onto/ENM_8000001,,http://purl.obolibrary.org/obo/IAO_0000064,http://purl.enanomapper.org/onto/ENM_8000002|http://purl.enanomapper.org/onto/ENM_8000003|http://purl.enanomapper.org/onto/ENM_8000026,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000002,Supervised learning,http://purl.enanomapper.org/onto/ENM_8000002,,http://purl.enanomapper.org/onto/ENM_8000001,http://purl.enanomapper.org/onto/ENM_8000004|http://purl.enanomapper.org/onto/ENM_8000005,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000003,Unsupervised Learning,http://purl.enanomapper.org/onto/ENM_8000003,,http://purl.enanomapper.org/onto/ENM_8000001,http://purl.enanomapper.org/onto/ENM_8000006,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000004,regression,http://purl.enanomapper.org/onto/ENM_8000004,,http://purl.enanomapper.org/onto/ENM_8000002,http://purl.enanomapper.org/onto/ENM_8000016|http://purl.enanomapper.org/onto/ENM_8000017|http://purl.enanomapper.org/onto/ENM_8000024,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000005,classification,http://purl.enanomapper.org/onto/ENM_8000005,,http://purl.enanomapper.org/onto/ENM_8000002,http://purl.enanomapper.org/onto/ENM_8000014|http://purl.enanomapper.org/onto/ENM_8000015,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000006,clustering,http://purl.enanomapper.org/onto/ENM_8000006,,http://purl.enanomapper.org/onto/ENM_8000003,http://purl.enanomapper.org/onto/ENM_8000007|http://purl.enanomapper.org/onto/ENM_8000008|http://purl.enanomapper.org/onto/ENM_8000009,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000007,agglomeration clustering methodologies,http://purl.enanomapper.org/onto/ENM_8000007,,http://purl.enanomapper.org/onto/ENM_8000006,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000008,biclustering,http://purl.enanomapper.org/onto/ENM_8000008,,http://purl.enanomapper.org/onto/ENM_8000006,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000009,Hierarchical clustering is a set of nested clusters that are organized as a tree (source: https://www-users.cs.umn.edu/~kumar/dmbook/ch8.pdf).,http://purl.enanomapper.org/onto/ENM_8000009,,http://purl.enanomapper.org/onto/ENM_8000006,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000010,bernoulli naive bayes,http://purl.enanomapper.org/onto/ENM_8000010,,http://purl.enanomapper.org/onto/ENM_8000014,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000011,generalised naive bayes,http://purl.enanomapper.org/onto/ENM_8000011,,http://purl.enanomapper.org/onto/ENM_8000014,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000012,multinomial naive bayes,http://purl.enanomapper.org/onto/ENM_8000012,,http://purl.enanomapper.org/onto/ENM_8000014,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000013,numeric data entry,http://purl.enanomapper.org/onto/ENM_8000013,,http://purl.enanomapper.org/onto/ENM_8000021,http://purl.enanomapper.org/onto/ENM_8000096,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000014,model-based classification,http://purl.enanomapper.org/onto/ENM_8000014,,http://purl.enanomapper.org/onto/ENM_8000005,http://purl.enanomapper.org/onto/ENM_8000010|http://purl.enanomapper.org/onto/ENM_8000011|http://purl.enanomapper.org/onto/ENM_8000012|http://purl.enanomapper.org/onto/ENM_8000018|http://purl.enanomapper.org/onto/ENM_8000065|http://purl.enanomapper.org/onto/ENM_8000091,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000015,instance-based classification,http://purl.enanomapper.org/onto/ENM_8000015,,http://purl.enanomapper.org/onto/ENM_8000005,http://purl.enanomapper.org/onto/ENM_8000074,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000016,instance-based regression,http://purl.enanomapper.org/onto/ENM_8000016,,http://purl.enanomapper.org/onto/ENM_8000004,http://purl.enanomapper.org/onto/ENM_8000122,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000017,model-based regression,http://purl.enanomapper.org/onto/ENM_8000017,,http://purl.enanomapper.org/onto/ENM_8000004,http://purl.enanomapper.org/onto/ENM_8000025|http://purl.enanomapper.org/onto/ENM_8000092|http://purl.enanomapper.org/onto/ENM_8000093|http://purl.enanomapper.org/onto/ENM_8000094,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000018,artificial neural network classification,http://purl.enanomapper.org/onto/ENM_8000018,,http://purl.enanomapper.org/onto/ENM_8000014,http://purl.enanomapper.org/onto/ENM_8000121,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000020,,http://purl.enanomapper.org/onto/ENM_8000020,,,http://purl.enanomapper.org/onto/ENM_8000033|http://purl.enanomapper.org/onto/ENM_8000034|http://purl.enanomapper.org/onto/ENM_8000035|http://purl.enanomapper.org/onto/ENM_8000036|http://purl.enanomapper.org/onto/ENM_8000037|http://purl.enanomapper.org/onto/ENM_8000038|http://purl.enanomapper.org/onto/ENM_8000041,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000021,data type,http://purl.enanomapper.org/onto/ENM_8000021,,http://purl.obolibrary.org/obo/IAO_0000027,http://purl.enanomapper.org/onto/ENM_8000013|http://purl.enanomapper.org/onto/ENM_8000022|http://purl.enanomapper.org/onto/ENM_8000023|http://purl.enanomapper.org/onto/ENM_8000068|http://purl.enanomapper.org/onto/ENM_8000069,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000022,numeric,http://purl.enanomapper.org/onto/ENM_8000022,,http://purl.enanomapper.org/onto/ENM_8000021,http://purl.enanomapper.org/onto/ENM_8000095,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000023,string,http://purl.enanomapper.org/onto/ENM_8000023,,http://purl.enanomapper.org/onto/ENM_8000021,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000024,artificial neural network regression,http://purl.enanomapper.org/onto/ENM_8000024,,http://purl.enanomapper.org/onto/ENM_8000004,http://purl.enanomapper.org/onto/ENM_8000028,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000025,variable importance in projection scores,http://purl.enanomapper.org/onto/ENM_8000025,,http://purl.enanomapper.org/onto/ENM_8000017,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000026,domain of applicability,http://purl.enanomapper.org/onto/ENM_8000026,,http://purl.enanomapper.org/onto/ENM_8000001,http://purl.enanomapper.org/onto/ENM_8000072,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000027,,http://purl.enanomapper.org/onto/ENM_8000027,,,http://purl.enanomapper.org/onto/ENM_8000099|http://purl.enanomapper.org/onto/ENM_8000100,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000028,radial basis function artificial neural networks regression,http://purl.enanomapper.org/onto/ENM_8000028,,http://purl.enanomapper.org/onto/ENM_8000024,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000033,aspect ratio x,http://purl.enanomapper.org/onto/ENM_8000033,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000034,aspect ratio y,http://purl.enanomapper.org/onto/ENM_8000034,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000035,bounding rectangle,http://purl.enanomapper.org/onto/ENM_8000035,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000036,centre of mass,http://purl.enanomapper.org/onto/ENM_8000036,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000037,centroid,http://purl.enanomapper.org/onto/ENM_8000037,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000038,circularity,http://purl.enanomapper.org/onto/ENM_8000038,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000041,fit ellipse,http://purl.enanomapper.org/onto/ENM_8000041,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000065,decision tree,http://purl.enanomapper.org/onto/ENM_8000065,,http://purl.enanomapper.org/onto/ENM_8000014,http://purl.enanomapper.org/onto/ENM_8000070|http://purl.enanomapper.org/onto/ENM_8000071,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000068,bundle,http://purl.enanomapper.org/onto/ENM_8000068,,http://purl.enanomapper.org/onto/ENM_8000021,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000069,categorical data,http://purl.enanomapper.org/onto/ENM_8000069,,http://purl.enanomapper.org/onto/ENM_8000021,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000070,cmi decision tree,http://purl.enanomapper.org/onto/ENM_8000070,,http://purl.enanomapper.org/onto/ENM_8000065,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000071,id3 decision trees,http://purl.enanomapper.org/onto/ENM_8000071,,http://purl.enanomapper.org/onto/ENM_8000065,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000072,leverage method,http://purl.enanomapper.org/onto/ENM_8000072,,http://purl.enanomapper.org/onto/ENM_8000026,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000073,information resource,http://purl.enanomapper.org/onto/ENM_8000073,,http://purl.obolibrary.org/obo/IAO_0000030,http://purl.enanomapper.org/onto/ENM_8000075|http://purl.enanomapper.org/onto/ENM_8000076|http://purl.enanomapper.org/onto/ENM_8000077|http://purl.enanomapper.org/onto/ENM_8000078|http://purl.enanomapper.org/onto/ENM_8000079|http://purl.enanomapper.org/onto/ENM_8000080,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000074,read accross,http://purl.enanomapper.org/onto/ENM_8000074,,http://purl.enanomapper.org/onto/ENM_8000015,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000075,learning,http://purl.enanomapper.org/onto/ENM_8000075,,http://purl.enanomapper.org/onto/ENM_8000073,http://purl.enanomapper.org/onto/ENM_8000083,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000076,model,http://purl.enanomapper.org/onto/ENM_8000076,,http://purl.enanomapper.org/onto/ENM_8000073,http://purl.enanomapper.org/onto/ENM_8000084|http://purl.enanomapper.org/onto/ENM_8000085|http://purl.enanomapper.org/onto/ENM_8000086|http://purl.enanomapper.org/onto/ENM_8000087|http://purl.enanomapper.org/onto/ENM_8000088|http://purl.enanomapper.org/onto/ENM_8000089|http://purl.enanomapper.org/onto/ENM_8000090,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000077,preprocessing,http://purl.enanomapper.org/onto/ENM_8000077,,http://purl.enanomapper.org/onto/ENM_8000073,http://purl.enanomapper.org/onto/ENM_8000097|http://purl.enanomapper.org/onto/ENM_8000098,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000078,report,http://purl.enanomapper.org/onto/ENM_8000078,,http://purl.enanomapper.org/onto/ENM_8000073,http://purl.enanomapper.org/onto/ENM_8000081|http://purl.enanomapper.org/onto/ENM_8000082,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000079,task,http://purl.enanomapper.org/onto/ENM_8000079,,http://purl.enanomapper.org/onto/ENM_8000073,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000080,validation,http://purl.enanomapper.org/onto/ENM_8000080,,http://purl.enanomapper.org/onto/ENM_8000073,http://purl.enanomapper.org/onto/ENM_8000112|http://purl.enanomapper.org/onto/ENM_8000113|http://purl.enanomapper.org/onto/ENM_8000114,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000081,array calculations,http://purl.enanomapper.org/onto/ENM_8000081,,http://purl.enanomapper.org/onto/ENM_8000078,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000082,single calculations,http://purl.enanomapper.org/onto/ENM_8000082,,http://purl.enanomapper.org/onto/ENM_8000078,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000083,elastic net,http://purl.enanomapper.org/onto/ENM_8000083,,http://purl.enanomapper.org/onto/ENM_8000075,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000084,dependent feature,http://purl.enanomapper.org/onto/ENM_8000084,,http://purl.enanomapper.org/onto/ENM_8000076,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000085,independent feature,http://purl.enanomapper.org/onto/ENM_8000085,,http://purl.enanomapper.org/onto/ENM_8000076,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000086,input data,http://purl.enanomapper.org/onto/ENM_8000086,,http://purl.enanomapper.org/onto/ENM_8000076,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000087,input variable,http://purl.enanomapper.org/onto/ENM_8000087,,http://purl.enanomapper.org/onto/ENM_8000076,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000088,model parameter,http://purl.enanomapper.org/onto/ENM_8000088,,http://purl.enanomapper.org/onto/ENM_8000076,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000089,predicted feature,http://purl.enanomapper.org/onto/ENM_8000089,,http://purl.enanomapper.org/onto/ENM_8000076,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000090,required feature,http://purl.enanomapper.org/onto/ENM_8000090,,http://purl.enanomapper.org/onto/ENM_8000076,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000091,partial least squares,http://purl.enanomapper.org/onto/ENM_8000091,,http://purl.enanomapper.org/onto/ENM_8000014,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000092,lasso,http://purl.enanomapper.org/onto/ENM_8000092,,http://purl.enanomapper.org/onto/ENM_8000017,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000093,partial least squares,http://purl.enanomapper.org/onto/ENM_8000093,,http://purl.enanomapper.org/onto/ENM_8000017,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000094,ridge regression,http://purl.enanomapper.org/onto/ENM_8000094,,http://purl.enanomapper.org/onto/ENM_8000017,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000095,binary data,http://purl.enanomapper.org/onto/ENM_8000095,,http://purl.enanomapper.org/onto/ENM_8000022,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000096,parameter data,http://purl.enanomapper.org/onto/ENM_8000096,,http://purl.enanomapper.org/onto/ENM_8000013,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000097,normalization,http://purl.enanomapper.org/onto/ENM_8000097,,http://purl.enanomapper.org/onto/ENM_8000077,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000098,scaling,http://purl.enanomapper.org/onto/ENM_8000098,,http://purl.enanomapper.org/onto/ENM_8000077,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000099,chemical hardness,http://purl.enanomapper.org/onto/ENM_8000099,,http://purl.enanomapper.org/onto/ENM_8000027,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000100,conduction band,http://purl.enanomapper.org/onto/ENM_8000100,,http://purl.enanomapper.org/onto/ENM_8000027,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000112,external validation,http://purl.enanomapper.org/onto/ENM_8000112,,http://purl.enanomapper.org/onto/ENM_8000080,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000113,split validation,http://purl.enanomapper.org/onto/ENM_8000113,,http://purl.enanomapper.org/onto/ENM_8000080,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000114,validation information,http://purl.enanomapper.org/onto/ENM_8000114,,http://purl.enanomapper.org/onto/ENM_8000080,http://purl.enanomapper.org/onto/ENM_8000115|http://purl.enanomapper.org/onto/ENM_8000116|http://purl.enanomapper.org/onto/ENM_8000117|http://purl.enanomapper.org/onto/ENM_8000118,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000115,classification statistics,http://purl.enanomapper.org/onto/ENM_8000115,,http://purl.enanomapper.org/onto/ENM_8000114,http://purl.enanomapper.org/onto/ENM_8000119|http://purl.enanomapper.org/onto/ENM_8000120,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000116,cross validation information,http://purl.enanomapper.org/onto/ENM_8000116,,http://purl.enanomapper.org/onto/ENM_8000114,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000117,regression statistics,http://purl.enanomapper.org/onto/ENM_8000117,,http://purl.enanomapper.org/onto/ENM_8000114,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000118,y scrambling,http://purl.enanomapper.org/onto/ENM_8000118,,http://purl.enanomapper.org/onto/ENM_8000114,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000119,class value statistics,http://purl.enanomapper.org/onto/ENM_8000119,,http://purl.enanomapper.org/onto/ENM_8000115,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000120,confusion matrix,http://purl.enanomapper.org/onto/ENM_8000120,,http://purl.enanomapper.org/onto/ENM_8000115,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000121,radial basis function artificial neural networks classification,http://purl.enanomapper.org/onto/ENM_8000121,,http://purl.enanomapper.org/onto/ENM_8000018,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000122,read accross,http://purl.enanomapper.org/onto/ENM_8000122,,http://purl.enanomapper.org/onto/ENM_8000016,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000222,PrefLabel,http://purl.enanomapper.org/onto/ENM_8000222,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.org/onto/ENM_8000249,DNA-damage lung,http://purl.enanomapper.org/onto/ENM_8000249,,http://purl.enanomapper.org/onto/ENM_9000017,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000313,research organisation registry identifier,http://purl.enanomapper.org/onto/ENM_8000313,,http://purl.obolibrary.org/obo/IAO_0000030,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_9000017,,http://purl.enanomapper.org/onto/ENM_9000017,,,http://purl.enanomapper.org/onto/ENM_8000249,,,,,http://www.w3.org/2002/07/owl#Class,, +http://semanticscience.org/resource/CHEMINF_000464,,http://semanticscience.org/resource/CHEMINF_000464,,,http://purl.enanomapper.org/onto/ENM_1200002,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:comment,,http://www.w3.org/2000/01/rdf-schema#comment,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:isDefinedBy,,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/lifecycle.csv b/internal-dev/templates/lifecycle.csv new file mode 100644 index 00000000..57cc7228 --- /dev/null +++ b/internal-dev/templates/lifecycle.csv @@ -0,0 +1,11 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +BFO:0000015,,http://purl.obolibrary.org/obo/BFO_0000015,,,http://purl.enanomapper.net/onto/NMLCO_00000000,,,,,http://www.w3.org/2002/07/owl#Class,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:description,,http://purl.org/dc/elements/1.1/description,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:format,,http://purl.org/dc/elements/1.1/format,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:language,,http://purl.org/dc/elements/1.1/language,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:rights,,http://purl.org/dc/elements/1.1/rights,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:title,,http://purl.org/dc/elements/1.1/title,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.net/onto/NMLCO_00000000,Nanomaterial lifecycle stage,http://purl.enanomapper.net/onto/NMLCO_00000000,,http://purl.obolibrary.org/obo/BFO_0000015,http://purl.enanomapper.net/onto/NMLCO_00000010,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/NMLCO_00000010,Environmental fate,http://purl.enanomapper.net/onto/NMLCO_00000010,,http://purl.enanomapper.net/onto/NMLCO_00000000,,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/pchem.csv b/internal-dev/templates/pchem.csv index a6c9c840..f27e1cfa 100644 --- a/internal-dev/templates/pchem.csv +++ b/internal-dev/templates/pchem.csv @@ -1,10 +1,39 @@ ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range BFO:0000015,,http://purl.obolibrary.org/obo/BFO_0000015,,,http://purl.enanomapper.org/onto/ENM_0000114,,,,,http://www.w3.org/2002/07/owl#Class,, -BFO:0000019,,http://purl.obolibrary.org/obo/BFO_0000019,,,http://purl.enanomapper.org/onto/ENM_0000101|http://purl.enanomapper.org/onto/ENM_0000103|http://purl.enanomapper.org/onto/ENM_0000107|http://purl.enanomapper.org/onto/ENM_9000003|http://purl.enanomapper.org/onto/ENM_9000004|http://purl.enanomapper.org/onto/ENM_9000100,,,,,http://www.w3.org/2002/07/owl#Class,, +BFO:0000016,,http://purl.obolibrary.org/obo/BFO_0000016,,,http://purl.enanomapper.net/onto/ENM_0310210,,,,,http://www.w3.org/2002/07/owl#Class,, +BFO:0000019,,http://purl.obolibrary.org/obo/BFO_0000019,,,http://purl.enanomapper.net/onto/ENM_8461735|http://purl.enanomapper.org/onto/ENM_0000101|http://purl.enanomapper.org/onto/ENM_0000103|http://purl.enanomapper.org/onto/ENM_0000107|http://purl.enanomapper.org/onto/ENM_9000003|http://purl.enanomapper.org/onto/ENM_9000004|http://purl.enanomapper.org/onto/ENM_9000100,,,,,http://www.w3.org/2002/07/owl#Class,, +IAO:0000115,,http://purl.obolibrary.org/obo/IAO_0000115,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +IAO:0000119,,http://purl.obolibrary.org/obo/IAO_0000119,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +PATO:0000973,,http://purl.obolibrary.org/obo/PATO_0000973,,,http://purl.enanomapper.net/onto/ENM_3991469,,,,,http://www.w3.org/2002/07/owl#Class,, +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:license,,http://purl.org/dc/elements/1.1/license,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:source,,http://purl.org/dc/elements/1.1/source,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.net/onto/ENM_0310210,Interaction potential,http://purl.enanomapper.net/onto/ENM_0310210,,http://purl.obolibrary.org/obo/BFO_0000016,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_3991469,mesoporosity,http://purl.enanomapper.net/onto/ENM_3991469,,http://purl.obolibrary.org/obo/PATO_0000973,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_6390284,Oxygen vacancies,http://purl.enanomapper.net/onto/ENM_6390284,,http://semanticscience.org/resource/CHEMINF_000101,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/onto/ENM_8461735,Steric hindrance,http://purl.enanomapper.net/onto/ENM_8461735,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_0000101,redox speciation,http://purl.enanomapper.org/onto/ENM_0000101,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_0000103,osmotic concentration,http://purl.enanomapper.org/onto/ENM_0000103,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_0000107,Preferential orientation,http://purl.enanomapper.org/onto/ENM_0000107,,http://purl.obolibrary.org/obo/BFO_0000019,,,,,,http://www.w3.org/2002/07/owl#Class,, http://purl.enanomapper.org/onto/ENM_0000114,Speciation,http://purl.enanomapper.org/onto/ENM_0000114,,http://purl.obolibrary.org/obo/BFO_0000015,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_1200003,perovskite,http://purl.enanomapper.org/onto/ENM_1200003,,http://semanticscience.org/resource/CHEMINF_000102,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000027,,http://purl.enanomapper.org/onto/ENM_8000027,,,http://purl.enanomapper.org/onto/ENM_8000101|http://purl.enanomapper.org/onto/ENM_8000102|http://purl.enanomapper.org/onto/ENM_8000103|http://purl.enanomapper.org/onto/ENM_8000104|http://purl.enanomapper.org/onto/ENM_8000105|http://purl.enanomapper.org/onto/ENM_8000106|http://purl.enanomapper.org/onto/ENM_8000107|http://purl.enanomapper.org/onto/ENM_8000108|http://purl.enanomapper.org/onto/ENM_8000109|http://purl.enanomapper.org/onto/ENM_8000110|http://purl.enanomapper.org/onto/ENM_8000111,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000101,electronic chemical potential,http://purl.enanomapper.org/onto/ENM_8000101,,http://purl.enanomapper.org/onto/ENM_8000027,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000102,Mullikens electronegativity Xc,http://purl.enanomapper.org/onto/ENM_8000102,,http://purl.enanomapper.org/onto/ENM_8000027,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000103,parr and poples absolute hardness,http://purl.enanomapper.org/onto/ENM_8000103,,http://purl.enanomapper.org/onto/ENM_8000027,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000104,polarizability derived from the dipole moment ad,http://purl.enanomapper.org/onto/ENM_8000104,,http://purl.enanomapper.org/onto/ENM_8000027,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000105,polarizability derived from the heat of formation ahof,http://purl.enanomapper.org/onto/ENM_8000105,,http://purl.enanomapper.org/onto/ENM_8000027,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000106,schuurmann mo shift 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http://purl.enanomapper.net/php/NM_000100,http://purl.enanomapper.net/php/NM_001001|http://purl.enanomapper.net/php/NM_001002|http://purl.enanomapper.net/php/NM_001003|http://purl.enanomapper.net/php/NM_001004|http://purl.enanomapper.net/php/NM_001005,http://purl.enanomapper.net/php/CHEMINF_000123 and (http://purl.obolibrary.org/obo/IAO_0000136 some http://purl.enanomapper.net/php/NM_000100),,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/php/NM_000006,,http://purl.enanomapper.net/php/NM_000006,,,http://purl.enanomapper.net/php/NM_001005|http://purl.enanomapper.net/php/NM_001006|http://purl.enanomapper.net/php/NM_001007|http://purl.enanomapper.net/php/NM_001008|http://purl.enanomapper.net/php/NM_001009,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.net/php/NM_000100,metal oxide,http://purl.enanomapper.net/php/NM_000100,,http://purl.enanomapper.net/php/NM_000001,http://purl.enanomapper.net/php/NM_000103,,,,,http://www.w3.org/2002/07/owl#Class,, 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value,http://purl.enanomapper.org/onto/ENM_8000044,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000045,median,http://purl.enanomapper.org/onto/ENM_8000045,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000046,min grey levels,http://purl.enanomapper.org/onto/ENM_8000046,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000047,max grey levels,http://purl.enanomapper.org/onto/ENM_8000047,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000048,modal grey value,http://purl.enanomapper.org/onto/ENM_8000048,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000049,particle size in media,http://purl.enanomapper.org/onto/ENM_8000049,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000051,porosity x,http://purl.enanomapper.org/onto/ENM_8000051,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000052,porosity y,http://purl.enanomapper.org/onto/ENM_8000052,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000053,roundness,http://purl.enanomapper.org/onto/ENM_8000053,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000054,shape descriptors,http://purl.enanomapper.org/onto/ENM_8000054,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000055,skewness,http://purl.enanomapper.org/onto/ENM_8000055,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000056,solidity,http://purl.enanomapper.org/onto/ENM_8000056,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000057,sphericity,http://purl.enanomapper.org/onto/ENM_8000057,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000058,surface diameter,http://purl.enanomapper.org/onto/ENM_8000058,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000059,area,http://purl.enanomapper.org/onto/ENM_8000059,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000061,volume,http://purl.enanomapper.org/onto/ENM_8000061,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000062,volume mass diameter,http://purl.enanomapper.org/onto/ENM_8000062,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000063,volume surface diameter,http://purl.enanomapper.org/onto/ENM_8000063,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000064,aspect ratio,http://purl.enanomapper.org/onto/ENM_8000064,,http://purl.enanomapper.org/onto/ENM_8000020,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000066,gene ontology descriptors,http://purl.enanomapper.org/onto/ENM_8000066,,http://purl.enanomapper.org/onto/ENM_8000067,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000067,BIO descriptors,http://purl.enanomapper.org/onto/ENM_8000067,,http://purl.enanomapper.org/onto/ENM_8000029,http://purl.enanomapper.org/onto/ENM_8000066,,,,,http://www.w3.org/2002/07/owl#Class,, +http://purl.enanomapper.org/onto/ENM_8000222,,http://purl.enanomapper.org/onto/ENM_8000222,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.org/obo/owl/OBO_REL#bearer_of,,http://purl.org/obo/owl/OBO_REL#bearer_of,,,,,,,,http://www.w3.org/2002/07/owl#ObjectProperty,, +http://semanticscience.org/resource/CHEMINF_000123,chemical descriptor,http://semanticscience.org/resource/CHEMINF_000123,,,http://purl.enanomapper.org/onto/ENM_8000030|http://purl.enanomapper.org/onto/ENM_8000031|http://purl.enanomapper.org/onto/ENM_8000032,,,,,http://www.w3.org/2002/07/owl#Class,, +http://semanticscience.org/resource/SIO_000277,,http://semanticscience.org/resource/SIO_000277,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +owl:versionInfo,,http://www.w3.org/2002/07/owl#versionInfo,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:isDefinedBy,,http://www.w3.org/2000/01/rdf-schema#isDefinedBy,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/internal-dev/templates/units.csv b/internal-dev/templates/units.csv new file mode 100644 index 00000000..8d46e30a --- /dev/null +++ b/internal-dev/templates/units.csv @@ -0,0 +1,7 @@ +ID,LABEL,IRI,SYNONYMS,SubClass Of,SubClasses,Equivalent Class,SubProperty Of,Equivalent Property,Disjoint With,Type,Domain,Range +dc11:contributor,,http://purl.org/dc/elements/1.1/contributor,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +dc11:license,,http://purl.org/dc/elements/1.1/license,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +http://purl.enanomapper.net/onto/ENM_6804785,ng/μg protein,http://purl.enanomapper.net/onto/ENM_6804785,,http://www.bioassayontology.org/bao#BAO_0002752,,,,,,http://www.w3.org/2002/07/owl#Class,, +http://www.bioassayontology.org/bao#BAO_0002752,,http://www.bioassayontology.org/bao#BAO_0002752,,,http://purl.enanomapper.net/onto/ENM_6804785,,,,,http://www.w3.org/2002/07/owl#Class,, +rdfs:comment,,http://www.w3.org/2000/01/rdf-schema#comment,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, +rdfs:label,,http://www.w3.org/2000/01/rdf-schema#label,,,,,,,,http://www.w3.org/2002/07/owl#AnnotationProperty,, diff --git a/scripts/src/internal_terms_update.sh b/scripts/src/internal_terms_update.sh index 2d382b8e..b9b1b419 100644 --- a/scripts/src/internal_terms_update.sh +++ b/scripts/src/internal_terms_update.sh @@ -8,8 +8,9 @@ wget -nc $ROBOT_JAR sh robot \ export --input internal-dev/bao-ext.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ - --export internal-dev/templates/bioassay.csv \ - --entity-format IRI + --export internal-dev/templates/assay.csv \ + --entity-format IRI \ + --include "classes properties individuals" # TODO Extract authors and versions from the original # TODO template into an internal module # TODO annotate with version IRI, authors, and upstream ontology of choice @@ -19,13 +20,15 @@ sh robot \ export --input internal-dev/endpoints.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ --export internal-dev/templates/endpoints.csv \ - --entity-format IRI + --entity-format IRI \ + --include "classes properties individuals" # Chemical entities sh robot \ export --input internal-dev/chebi-ext.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ --export internal-dev/templates/chemical_entities.csv \ - --entity-format IRI + --entity-format IRI \ + --include "classes properties individuals" # TODO Extract authors and versions from the original # TODO template into an internal module # TODO annotate with version IRI, authors, and upstream ontology of choice @@ -34,7 +37,8 @@ sh robot \ export --input internal-dev/npo-ext.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ --export internal-dev/templates/enms.csv \ - --entity-format IRI + --entity-format IRI \ + --include "classes properties individuals" # TODO Extract authors and versions from the original # TODO template into an internal module # TODO annotate with version IRI, authors, and upstream ontology of choice @@ -44,17 +48,19 @@ sh robot \ export --input internal-dev/bfo-ext.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ --export internal-dev/templates/pchem.csv \ - --entity-format IRI + --entity-format IRI \ + --include "classes properties individuals" # TODO Extract authors and versions from the original # TODO template into an internal module # TODO annotate with version IRI, authors, and upstream ontology of choice -# Methods +# Chemical methods sh robot \ export --input internal-dev/chmo-ext.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ --export internal-dev/templates/chemical_methods.csv \ - --entity-format IRI + --entity-format IRI \ + --include "classes properties individuals" # TODO Extract authors and versions from the original # TODO template into an internal module # TODO annotate with version IRI, authors, and upstream ontology of choice @@ -64,7 +70,8 @@ sh robot \ export --input internal-dev/efo-ext.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ --export internal-dev/templates/experimental_factors.csv \ - --entity-format IRI + --entity-format IRI \ + --include "classes properties individuals" # TODO Extract authors and versions from the original # TODO template into an internal module # TODO annotate with version IRI, authors, and upstream ontology of choice @@ -74,7 +81,8 @@ sh robot \ export --input internal-dev/go-ext.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ --export internal-dev/templates/biological_process.csv \ - --entity-format IRI + --entity-format IRI \ + --include "classes properties individuals" # TODO Extract authors and versions from the original # TODO template into an internal module # TODO annotate with version IRI, authors, and upstream ontology of choice @@ -85,20 +93,30 @@ sh robot \ export --input internal-dev/efo-ext.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ --export internal-dev/templates/experimental_factors.csv \ - --entity-format IRI + --entity-format IRI \ + --include "classes properties individuals" # TODO Extract authors and versions from the original # TODO template into an internal module # TODO annotate with version IRI, authors, and upstream ontology of choice -# IAO -## TODO Divide classes according to type (assay, endpoint, method, attribute) +# Computational methods +sh robot \ + export --input internal-dev/iao-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/computational_methods.csv \ + --entity-format IRI \ + --include "classes properties individuals" + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice # NCIT sh robot \ export --input internal-dev/ncit-ext.owl \ --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ --export internal-dev/templates/cell_line.csv \ - --entity-format IRI + --entity-format IRI \ + --include "classes properties individuals" # TODO Extract authors and versions from the original # TODO template into an internal module # TODO annotate with version IRI, authors, and upstream ontology of choice @@ -107,8 +125,68 @@ sh robot \ # Regulation, guidance, governance -# NanoQSAR -## TODO decide whether to separate development of nanoQSAR ontology or incorporate into CHEMINF +# Descriptors +sh robot \ + export --input internal-dev/descriptors/nm.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/qsar.csv \ + --entity-format IRI \ + --include "classes properties individuals" + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice -# CHEMINF -## TODO add classes to upstream ontology CHEMINF \ No newline at end of file +# Information content entities +sh robot \ + export --input internal-dev/iao-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/information_content.csv \ + --entity-format IRI \ + --include "classes properties individuals" + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# Units +sh robot \ + export --input internal-dev/uo-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/units.csv \ + --entity-format IRI \ + --include "classes properties individuals" + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# Units +sh robot \ + export --input internal-dev/uo-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/units.csv \ + --entity-format IRI \ + --include "classes properties individuals" + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# Units +sh robot \ + export --input internal-dev/uo-ext.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/units.csv \ + --entity-format IRI \ + --include "classes properties individuals" + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice + +# Life cycle +sh robot \ + export --input internal-dev/nmlco.owl \ + --header "ID|LABEL|IRI|SYNONYMS|SubClass Of|SubClasses|Equivalent Class|SubProperty Of|Equivalent Property|Disjoint With|Type|Domain|Range" \ + --export internal-dev/templates/lifecycle.csv \ + --entity-format IRI \ + --include "classes properties individuals" + # TODO Extract authors and versions from the original + # TODO template into an internal module + # TODO annotate with version IRI, authors, and upstream ontology of choice