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Jupyter notebook for metabolic profile visualization with Cytoscape #28

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kaizu opened this issue Apr 29, 2020 · 0 comments

Open

3 tasks

Jupyter notebook for metabolic profile visualization with Cytoscape #28

kaizu opened this issue Apr 29, 2020 · 0 comments

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kaizu commented Apr 29, 2020

This combination is useful not only for metabolic profile but also for expression profile.
The pathway networks to combine the profiles are

KEGG
escher
wikipathways

https://github.com/opencobra/COBRA.papers/blob/master/2019_efmviz/efmviz_rcy3_ecoli.Rmd
could be used for this purpose.

kaizu mentioned this issue

Jupyter notebook for metabolic profile visualization with Cytoscape ecell/ecell4#43

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