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Nightingale structure - AlphaFold colouring #255

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aurel-l opened this issue May 15, 2023 · 1 comment · May be fixed by #259
Open

Nightingale structure - AlphaFold colouring #255

aurel-l opened this issue May 15, 2023 · 1 comment · May be fixed by #259
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help wanted Extra attention is needed

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@aurel-l
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aurel-l commented May 15, 2023

Describe the bug
When loading an AlphaFold predicted structure, the structure is not coloured using the usual AlphaFold colouring for model confidence

To Reproduce
Load any AlphaFold prediction

Expected behavior
Should be displaying same colours as on the AlphaFoldDB website (see screenshot below)

Screenshots
Screenshot 2023-05-15 at 11 36 09
@aurel-l
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aurel-l commented May 15, 2023

Note that the goal of the structure viewer is to use the smallest possible amount of code from the Molstar library as to reduce its footprint. We should avoid using the UIPlugin loading everything.

We need to extract what bit of code is responsible of the colouring and just add this and nothing more.

@aurel-l aurel-l added the help wanted Extra attention is needed label May 15, 2023
@prihoda prihoda linked a pull request Jun 11, 2023 that will close this issue
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Color by pLDDT using Molstar extension (DRAFT) prihoda/nightingale
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