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how to infer reference of synthetic molecules #6

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xieyy46 opened this issue Oct 5, 2024 · 0 comments
Open

how to infer reference of synthetic molecules #6

xieyy46 opened this issue Oct 5, 2024 · 0 comments

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@xieyy46
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xieyy46 commented Oct 5, 2024

Hi mAFiA team,

Cheers for your great work with mAFiA! I would like to reanalyze your DRS data of synthetic molecules, but I've encountered some difficulties. Specifically, I would like to understand how you implemented the process where "Reference oligo sequences are mapped locally to each read and then chained together to infer the ligated sequence in each RNA strand." Would it be possible for you to provide the source code for this?

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