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environment.yml
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name: severityPred_env
channels:
- anaconda
- r
- bioconda
- abinit
- defaults
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- _tflow_select=2.3.0=mkl
- abseil-cpp=20211102.0=h27087fc_1
- absl-py=1.4.0=pyhd8ed1ab_0
- aioeasywebdav=2.4.0=pyha770c72_0
- aiohttp=3.8.3=py310h5eee18b_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- amply=0.1.5=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argcomplete=1.12.3=pyhd8ed1ab_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=22.2.0=pyh71513ae_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcrypt=3.2.0=py310h5eee18b_1
- binutils_impl_linux-64=2.38=h2a08ee3_1
- binutils_linux-64=2.38.0=hc2dff05_0
- bioconductor-annotate=1.76.0=r42hdfd78af_0
- bioconductor-annotationdbi=1.60.0=r42hdfd78af_0
- bioconductor-annotationhub=3.6.0=r42hdfd78af_0
- bioconductor-beachmat=2.14.0=r42hc247a5b_0
- bioconductor-biobase=2.58.0=r42hc0cfd56_0
- bioconductor-biocfilecache=2.6.0=r42hdfd78af_0
- bioconductor-biocgenerics=0.44.0=r42hdfd78af_0
- bioconductor-biocneighbors=1.16.0=r42hc247a5b_0
- bioconductor-biocparallel=1.32.5=r42hc247a5b_0
- bioconductor-biocsingular=1.14.0=r42hc247a5b_0
- bioconductor-biocversion=3.16.0=r42hdfd78af_0
- bioconductor-biostrings=2.66.0=r42hc0cfd56_0
- bioconductor-celldex=1.8.0=r42hdfd78af_0
- bioconductor-data-packages=20230202=hdfd78af_0
- bioconductor-delayedarray=0.24.0=r42hc0cfd56_0
- bioconductor-delayedmatrixstats=1.20.0=r42hdfd78af_0
- bioconductor-deseq2=1.38.0=r42hc247a5b_0
- bioconductor-edger=3.40.0=r42hc247a5b_0
- bioconductor-experimenthub=2.6.0=r42hdfd78af_0
- bioconductor-genefilter=1.80.0=r42h38f54d8_0
- bioconductor-geneplotter=1.76.0=r42hdfd78af_0
- bioconductor-genomeinfodb=1.34.8=r42hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.9=r42hdfd78af_0
- bioconductor-genomicranges=1.50.0=r42hc0cfd56_0
- bioconductor-interactivedisplaybase=1.36.0=r42hdfd78af_0
- bioconductor-iranges=2.32.0=r42hc0cfd56_0
- bioconductor-keggrest=1.38.0=r42hdfd78af_0
- bioconductor-limma=3.54.0=r42hc0cfd56_0
- bioconductor-matrixgenerics=1.10.0=r42hdfd78af_0
- bioconductor-s4vectors=0.36.0=r42hc0cfd56_0
- bioconductor-scaledmatrix=1.6.0=r42hdfd78af_0
- bioconductor-singler=2.0.0=r42hc247a5b_0
- bioconductor-sparsematrixstats=1.10.0=r42hc247a5b_0
- bioconductor-summarizedexperiment=1.28.0=r42hdfd78af_0
- bioconductor-xvector=0.38.0=r42hc0cfd56_0
- bioconductor-zlibbioc=1.44.0=r42hc0cfd56_0
- blas=1.0=openblas
- blinker=1.5=pyhd8ed1ab_0
- boto3=1.26.79=pyhd8ed1ab_0
- botocore=1.29.79=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py310h7f8727e_1002
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.01.10=h06a4308_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.3.0=pyhd8ed1ab_0
- cairo=1.16.0=hb05425b_3
- certifi=2022.12.7=py310h06a4308_0
- cffi=1.15.1=py310h74dc2b5_0
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- click=8.1.3=unix_pyhd8ed1ab_2
- cloudpickle=2.2.1=pyhd8ed1ab_0
- coin-or-cbc=2.10.8=h3786ebc_0
- coin-or-cgl=0.60.6=h6f57e76_2
- coin-or-clp=1.17.7=hc56784d_2
- coin-or-osi=0.108.7=h2720bb7_2
- coin-or-utils=2.11.6=h202d8b1_2
- coincbc=2.10.8=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.0.7=py310hdf3cbec_0
- cryptography=38.0.4=py310h9ce1e76_0
- curl=7.87.0=h5eee18b_0
- cycler=0.11.0=pyhd8ed1ab_0
- datrie=0.8.2=py310h7f8727e_0
- dbus=1.13.18=hb2f20db_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.18.1=py310h06a4308_3
- dpath=2.1.4=py310hff52083_0
- dropbox=11.36.0=pyhd8ed1ab_0
- exceptiongroup=1.1.0=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- fftw=3.3.9=h27cfd23_1
- filechunkio=1.8=py_2
- filelock=3.9.0=pyhd8ed1ab_0
- flatbuffers=22.12.06=hcb278e6_2
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=h52c9d5c_1
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.38.0=py310h5764c6d_1
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.3=py310h5eee18b_0
- ftputil=5.0.4=pyhd8ed1ab_0
- gast=0.4.0=pyh9f0ad1d_0
- gcc_impl_linux-64=11.2.0=h1234567_1
- gcc_linux-64=11.2.0=h5c386dc_0
- geos=3.11.1=h27087fc_0
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=11.2.0=h7a446d4_16
- gfortran_linux-64=11.2.0=hc2dff05_0
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.10=pyhd8ed1ab_0
- gitpython=3.1.31=pyhd8ed1ab_0
- glib=2.69.1=h4ff587b_1
- glpk=5.0=h445213a_0
- gmp=6.2.1=h58526e2_0
- google-api-core=2.11.0=pyhd8ed1ab_0
- google-api-python-client=2.79.0=pyhd8ed1ab_0
- google-auth=2.16.1=pyh1a96a4e_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_1
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- google-cloud-core=2.3.2=pyhd8ed1ab_0
- google-cloud-storage=2.7.0=pyh1a96a4e_0
- google-crc32c=1.5.0=py310h5eee18b_0
- google-pasta=0.2.0=pyh8c360ce_0
- google-resumable-media=2.4.1=pyhd8ed1ab_0
- googleapis-common-protos=1.57.1=pyhd8ed1ab_0
- graphite2=1.3.13=h58526e2_1001
- grpc-cpp=1.46.1=h33aed49_1
- grpcio=1.42.0=py310hce63b2e_0
- gsl=2.7=he838d99_0
- gst-plugins-base=1.14.1=h6a678d5_1
- gstreamer=1.14.1=h5eee18b_1
- gxx_impl_linux-64=11.2.0=h1234567_1
- gxx_linux-64=11.2.0=hc2dff05_0
- h5py=3.8.0=nompi_py310h0311031_100
- harfbuzz=2.4.0=hca77d97_0
- hdf5=1.12.2=nompi_h2386368_101
- httplib2=0.21.0=pyhd8ed1ab_0
- humanfriendly=10.0=py310h06a4308_1
- icu=58.2=he6710b0_3
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.0.0=pyha770c72_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=1.0.1=pyhd8ed1ab_0
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- jq=1.5=0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_core=5.2.0=py310h06a4308_0
- keras=2.10.0=py310h06a4308_0
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py310hbf28c38_1
- krb5=1.19.3=h3790be6_0
- lcms2=2.14=hfd0df8a_1
- ld_impl_linux-64=2.38=h1181459_1
- lerc=4.0.0=h27087fc_0
- libaec=1.0.6=hcb278e6_1
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=16_linux64_openblas
- libclang=10.0.1=default_hb85057a_2
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=7.87.0=h91b91d3_0
- libdeflate=1.17=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.12=h8f2d780_0
- libffi=3.3=he6710b0_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=11.2.0=h1234567_1
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libllvm10=10.0.1=he513fc3_3
- libllvm11=11.1.0=he0ac6c6_5
- libnghttp2=1.46.0=hce63b2e_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libpq=12.9=h16c4e8d_3
- libprotobuf=3.20.3=he621ea3_0
- libsanitizer=12.2.0=h46fd767_19
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=h8f2d780_0
- libstdcxx-devel_linux-64=11.2.0=h1234567_1
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.5.0=h6adf6a1_2
- libuuid=1.41.5=h5eee18b_0
- libwebp=1.2.4=h1daa5a0_1
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.0.1=hfa300c1_0
- libxml2=2.9.14=h74e7548_0
- libxslt=1.1.35=h4e12654_0
- libzlib=1.2.13=h166bdaf_4
- llvmlite=0.39.1=py310h58363a5_1
- logmuse=0.2.6=pyh8c360ce_0
- make=4.3=hd18ef5c_1
- markdown=3.4.1=pyhd8ed1ab_0
- markdown-it-py=2.2.0=pyhd8ed1ab_0
- markupsafe=2.1.1=py310h7f8727e_0
- matplotlib=3.7.0=py310hff52083_0
- matplotlib-base=3.7.0=py310he60537e_0
- mdurl=0.1.0=pyhd8ed1ab_0
- multidict=6.0.2=py310h5eee18b_0
- munkres=1.1.4=pyh9f0ad1d_0
- nbformat=5.7.3=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- nlopt=2.7.1=py310h3342525_3
- nspr=4.35=h27087fc_0
- nss=3.88=he45b914_0
- numba=0.56.4=py310ha5257ce_0
- numpy=1.23.5=py310h53a5b5f_0
- oauth2client=4.1.3=py_0
- oauthlib=3.2.2=pyhd8ed1ab_0
- openssl=1.1.1t=h7f8727e_0
- opt_einsum=3.3.0=pyhd8ed1ab_1
- packaging=23.0=pyhd8ed1ab_0
- pandas=1.5.3=py310h9b08913_0
- pandoc=2.19.2=h32600fe_1
- pango=1.45.3=hd140c19_0
- paramiko=3.0.0=pyhd8ed1ab_0
- pcre=8.45=h295c915_0
- pcre2=10.37=he7ceb23_1
- peppy=0.35.4=pyhd8ed1ab_0
- pillow=9.3.0=py310h6a678d5_2
- pip=23.0.1=pyhd8ed1ab_0
- pixman=0.40.0=h7f8727e_1
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- plac=1.3.5=pyhd8ed1ab_0
- platformdirs=3.0.0=pyhd8ed1ab_0
- pluggy=1.0.0=pyhd8ed1ab_5
- ply=3.11=py_1
- pooch=1.4.0=pyhd3eb1b0_0
- prettytable=3.6.0=pyhd8ed1ab_0
- protobuf=3.20.3=py310h6a678d5_0
- psutil=5.9.0=py310h5eee18b_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.7.0=py310hff52083_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.14.0=pyhd8ed1ab_0
- pyjwt=2.6.0=pyhd8ed1ab_0
- pynacl=1.5.0=py310h5eee18b_0
- pyopenssl=23.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py310h6a678d5_1
- pyrsistent=0.18.0=py310h7f8727e_0
- pysftp=0.2.9=py_1
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.2.1=pyhd8ed1ab_0
- python=3.10.4=h12debd9_0
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.3=pyhd8ed1ab_0
- python-flatbuffers=23.1.21=pyhd8ed1ab_0
- python-irodsclient=1.1.6=pyhd8ed1ab_0
- python_abi=3.10=2_cp310
- pytz=2022.7.1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0=py310h5eee18b_1
- qt-main=5.15.2=h327a75a_7
- qt-webengine=5.15.9=hd2b0992_4
- qtwebkit=5.212=h4eab89a_4
- r-abind=1.4_5=r42hc72bb7e_1004
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prefix: /home/alemsara/miniconda3/envs/immun2sev5