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Docker feature doesn't work on macOS #172

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nsheff opened this issue Aug 26, 2020 · 1 comment

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nsheff commented Aug 26, 2020

reported in several related issues:

these lines are optimized for linux:

pypiper/pypiper/manager.py

Lines 1904 to 1908 in 67908f2

    
           cmd += " --volume=/etc/group:/etc/group:ro" 
        
           cmd += " --volume=/etc/passwd:/etc/passwd:ro" 
        
           cmd += " --volume=/etc/shadow:/etc/shadow:ro" 
        
           cmd += " --volume=/etc/sudoers.d:/etc/sudoers.d:ro" 
        
           cmd += " --volume=/tmp/.X11-unix:/tmp/.X11-unix:rw"

need to somehow solve for macos natively.

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nsheff commented Aug 26, 2020

workaround posted in databio/bulker#56 (comment)

nsheff mentioned this issue

Define which docker image to use in build refgenie/refgenie#175

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