update.yml

name: Update repository

on:
  schedule:
    - cron: '51 6 * * *'
  workflow_dispatch:

jobs:
  update-repo:
    runs-on: ubuntu-latest
    steps:
      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '^3.9'

      - name: Configure git environment
        run: |
          git config --global user.email "team@dandiarchive.org"
          git config --global user.name "DANDI Bot"

      - name: Check out repository
        uses: actions/checkout@v4

      - name: Get dandisets-linkml-status-tools submodule content
        run: git submodule update --init --recursive --remote

      - name: Commit of the update of submodule if there is a change
        run: |
          if git diff --quiet -- "./tools"; then
            echo "There is no change in the dandisets-linkml-status-tools submodule."
          else
            git add ./tools
            git commit -m "Update dandisets-linkml-status-tools submodule"
            git push
            echo "The dandisets-linkml-status-tools submodule has been updated."
          fi
      - name: Install dependencies
        run: |
          sudo apt-get update
          sudo apt-get install datalad
          python -m pip install con-duct
          python -m pip install ./tools

      # Update this repo with the latest validation reports
      - name: datalad run dandisets-linkml-status with con-duct
        run: |
          datalad run -m "Get latest validation reports with a summary" duct dandisets-linkml-status --include-unpublished --dandi-instance dandi -l INFO
          git push
          echo "The repository has been updated with the latest validation reports."