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Pycytominer section in downstream analysis #18

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Arkkienkeli opened this issue Sep 23, 2022 · 3 comments
Open

Pycytominer section in downstream analysis #18

Arkkienkeli opened this issue Sep 23, 2022 · 3 comments
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@rsenft1 @yhan8

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@Arkkienkeli
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We need to review pycytominer section if it still valid and complete enough to be useful.
@jccaicedo
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@rsenft1 or @yhan8 do you have any experience with pycytominer and DeepProfiler features?
Should we loop Greg in to guide us and get example code? Or maybe we can remove this section for now?

@yhan8
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yhan8 commented Oct 12, 2022

The only script that I have that has not been adopted here in the doc is the extract_location.py. This script was used to extract locations for JUMP dataset SQLite files. Let me know if we want to include this somewhere.

@rsenft1
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rsenft1 commented Oct 13, 2022

I've used pycytominer, but not with DeepProfiler features before.

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@Arkkienkeli @jccaicedo @rsenft1 @yhan8