flatgfa-py

Python Bindings for FlatGFA

This is a Python interface for the FlatGFA library, which provides an efficient representation for pangenomic variation graphs in the Graphical Fragment Assembly (GFA) format.

You can install it from PyPI:

$ pip install flatgfa

Then, read the API documentation for details about what it can do so far.

Development

The easiest way to get started is with uv:

$ uv run --package flatgfa python example.py

That should build and install the package and then run our example.py script.

Or run the tests:

$ uv run --package flatgfa pytest