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Nanopore-conda-environment.yaml update #97

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tarah28 opened this issue Mar 29, 2021 · 0 comments
Open

Nanopore-conda-environment.yaml update #97

tarah28 opened this issue Mar 29, 2021 · 0 comments

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@tarah28
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tarah28 commented Mar 29, 2021

Hello,

Thanks for creating this nextflow pipeline! I am just setting it up using conda on an Ubuntu 18.04 workstation and noticed a problem. When I install artic with conda it installs artic 1.2.1 and pyyaml 5.4.1.

But in the ncov2019-artic-nf/environments/nanopore/environment.yml it lists dependencies as artic 1.1.3 and pyyaml 5.3.1. I'm not sure what else would need to be updated in the other scripts but thought I should pass this info on. I downgraded my installs to match the .yaml file and got it to work but was wondering if this could be updated to the latest versions please?

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