Access to undefined parameter 'gff'

[hodeco]

Hello,

at the very beginning I run into the following problem that I can not find a solution for. Did anybody have the problem before?

Many thanks in advance!

WARN: DSL 2 IS AN EXPERIMENTAL FEATURE UNDER DEVELOPMENT -- SYNTAX MAY CHANGE IN FUTURE RELEASE
executor > local (3)
[0f/b98f62] process > ncovIllumina:prepareReferenceFiles:articDownloadScheme (https://git... [100%] 1 of 1 ✔
[bc/c2382f] process > ncovIllumina:prepareReferenceFiles:indexReference (nCoV-2019.refere... [100%] 1 of 1 ✔
[- ] process > ncovIllumina:sequenceAnalysis:readTrimming -
[- ] process > ncovIllumina:sequenceAnalysis:readMapping -
[- ] process > ncovIllumina:sequenceAnalysis:trimPrimerSequences -
[- ] process > ncovIllumina:sequenceAnalysis:callVariants -
[- ] process > ncovIllumina:sequenceAnalysis:makeConsensus -
[- ] process > ncovIllumina:sequenceAnalysis:makeQCCSV -
[c1/a1760e] process > ncovIllumina:sequenceAnalysis:writeQCSummaryCSV (210129_test) [100%] 1 of 1 ✔
[- ] process > ncovIllumina:sequenceAnalysis:collateSamples -
WARN: Access to undefined parameter gff -- Initialise it to a default value eg. params.gff = some_value

[jhill1440]

Hello,

I am getting the same issue when running either the docker or singularity profiles.

My command I am running:
./nextflow run connor-lab/ncov2019-artic-nf -profile docker --illumina --prefix test1 --directory /home/

Thanks

[dianalir]

Hello,

I am getting the same issue when running either the docker or singularity profiles.

My command I am running:
./nextflow run connor-lab/ncov2019-artic-nf -profile docker --illumina --prefix test1 --directory /home/

Thanks

@jhill1440 did you manage to solve it?