From 2ba301e06bce2d3e843660d50bbaaf311dc8ba1a Mon Sep 17 00:00:00 2001 From: thylakoid Date: Mon, 9 Dec 2024 13:30:50 +0100 Subject: [PATCH] remove defaults and anaconda --- workflow/envs/abricate.yaml | 2 +- workflow/envs/antismash.yaml | 2 +- workflow/envs/assembly-stats.yaml | 2 +- workflow/envs/dbcan.yaml | 2 +- workflow/envs/fasttree.yaml | 1 + workflow/envs/gapseq.yaml | 1 - 6 files changed, 5 insertions(+), 5 deletions(-) diff --git a/workflow/envs/abricate.yaml b/workflow/envs/abricate.yaml index 72d70cc4..7b4dabd5 100644 --- a/workflow/envs/abricate.yaml +++ b/workflow/envs/abricate.yaml @@ -2,6 +2,6 @@ name: abricate channels: - conda-forge - bioconda - - defaults + #- defaults dependencies: - abricate=1 \ No newline at end of file diff --git a/workflow/envs/antismash.yaml b/workflow/envs/antismash.yaml index 14c13c96..63a53b06 100644 --- a/workflow/envs/antismash.yaml +++ b/workflow/envs/antismash.yaml @@ -2,7 +2,7 @@ name: antismash channels: - conda-forge - bioconda - - defaults + #- defaults dependencies: - antismash=7 diff --git a/workflow/envs/assembly-stats.yaml b/workflow/envs/assembly-stats.yaml index 76955356..9e23e0cf 100644 --- a/workflow/envs/assembly-stats.yaml +++ b/workflow/envs/assembly-stats.yaml @@ -2,6 +2,6 @@ name: assembly-stats channels: - conda-forge - bioconda - - defaults + #- defaults dependencies: - assembly-stats=1 \ No newline at end of file diff --git a/workflow/envs/dbcan.yaml b/workflow/envs/dbcan.yaml index 0dd8f7f9..3124af22 100644 --- a/workflow/envs/dbcan.yaml +++ b/workflow/envs/dbcan.yaml @@ -1,6 +1,6 @@ name: dbcan channels: - - anaconda + #- anaconda - conda-forge - bioconda dependencies: diff --git a/workflow/envs/fasttree.yaml b/workflow/envs/fasttree.yaml index 2c36e902..49d6eb5f 100644 --- a/workflow/envs/fasttree.yaml +++ b/workflow/envs/fasttree.yaml @@ -1,5 +1,6 @@ name: fasttree channels: + - conda-forge - bioconda dependencies: - fasttree=2 \ No newline at end of file diff --git a/workflow/envs/gapseq.yaml b/workflow/envs/gapseq.yaml index 2d54a729..389b63b7 100644 --- a/workflow/envs/gapseq.yaml +++ b/workflow/envs/gapseq.yaml @@ -2,7 +2,6 @@ name: gapseq channels: - conda-forge - bioconda - - defaults - r dependencies: - r-base=4.3