COPYING.txt

CMake BASIS License
===================

  Copyright (c) 2011-2012 University of Pennsylvania
  Copyright (c) 2013-2014 Carnegie Mellon University
  Copyright (c) 2013-2014 Andreas Schuh
  All rights reserved.
  
  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions are met: 
  
  1. Redistributions of source code must retain the above copyright notice, this
     list of conditions and the following disclaimer. 
  2. Redistributions in binary form must reproduce the above copyright notice,
     this list of conditions and the following disclaimer in the documentation
     and/or other materials provided with the distribution. 
  
  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
  ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
  WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
  DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
  ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
  (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
  LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
  ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  


SBIA Contribution and Software License Agreement ("Agreement")
==============================================================

  Version 1.0 (June 9, 2011)

  This Agreement covers contributions to and downloads from Software maintained by
  the Section of Biomedical Image Analysis, Department of Radiology at the University
  of Pennsylvania ("SBIA"). Part A of this Agreement applies to contributions of
  software and/or data to the Software (including making revisions of or additions
  to code and/or data already in this Software). Part B of this Agreement applies to
  downloads of software and/or data from SBIA. Part C of this Agreement applies to
  all transactions with SBIA. If you distribute Software (as defined below) downloaded
  from SBIA, all of the paragraphs of Part B of this Agreement must be included with
  and apply to such Software.

  Your contribution of software and/or data to SBIA (including prior to the date
  of the first publication of this Agreement, each a "Contribution") and/or
  downloading, copying, modifying, displaying, distributing or use of any software
  and/or data from SBIA (collectively, the "Software") constitutes acceptance of
  all of the terms and conditions of this Agreement. If you do not agree to such
  terms and conditions, you have no right to contribute your Contribution, or to
  download, copy, modify, display, distribute or use the Software.


  PART A. CONTRIBUTION AGREEMENT - LICENSE TO SBIA WITH RIGHT TO SUBLICENSE ("CONTRIBUTION AGREEMENT").
  -----------------------------------------------------------------------------------------------------

  1. As used in this Contribution Agreement, "you" means the individual contributing
     the Contribution to the Software maintained by SBIA and the institution or
     entity which employs or is otherwise affiliated with such individual in
     connection with such Contribution.

  2. This Contribution Agreement applies to all Contributions made to the Software
     maintained by SBIA, including without limitation Contributions made prior to
     the date of first publication of this Agreement. If at any time you make a
     Contribution to the Software, you represent that (i) you are legally authorized
     and entitled to make such Contribution and to grant all licenses granted in this
     Contribution Agreement with respect to such Contribution; (ii) if your
     Contribution includes any patient data, all such data is de-identified in
     accordance with U.S. confidentiality and security laws and requirements,
     including but not limited to the Health Insurance Portability and Accountability
     Act (HIPAA) and its regulations, and your disclosure of such data for the purposes
     contemplated by this Agreement is properly authorized and in compliance with all
     applicable laws and regulations; and (iii) you have preserved in the Contribution
     all applicable attributions, copyright notices and licenses for any third party
     software or data included in the Contribution.

  3. Except for the licenses granted in this Agreement, you reserve all right,
     title and interest in your Contribution.

  4. You hereby grant to SBIA, with the right to sublicense, a perpetual, worldwide,
     non-exclusive, no charge, royalty-free, irrevocable license to use, reproduce,
     make derivative works of, display and distribute the Contribution. If your
     Contribution is protected by patent, you hereby grant to SBIA, with the right
     to sublicense, a perpetual, worldwide, non-exclusive, no-charge, royalty-free,
     irrevocable license under your interest in patent rights covering the Contribution,
     to make, have made, use, sell and otherwise transfer your Contribution, alone
     or in combination with any other code.

  5. You acknowledge and agree that SBIA may incorporate your Contribution into
     the Software and may make the Software available to members of the public
     on an open source basis under terms substantially in accordance with the
     Software License set forth in Part B of this Agreement. You further acknowledge
     and agree that SBIA shall have no liability arising in connection with claims
     resulting from your breach of any of the terms of this Agreement.

  6. YOU WARRANT THAT TO THE BEST OF YOUR KNOWLEDGE YOUR CONTRIBUTION DOES NOT
     CONTAIN ANY CODE THAT REQUIRES OR PRESCRIBES AN "OPEN SOURCE LICENSE" FOR
     DERIVATIVE WORKS (by way of non-limiting example, the GNU General Public
     License or other so-called "reciprocal" license that requires any derived
     work to be licensed under the GNU General Public License or other
     "open source license").


  PART B. DOWNLOADING AGREEMENT - LICENSE FROM SBIA WITH RIGHT TO SUBLICENSE ("SOFTWARE LICENSE").
  ------------------------------------------------------------------------------------------------

  1. As used in this Software License, "you" means the individual downloading and/or
     using, reproducing, modifying, displaying and/or distributing the Software and
     the institution or entity which employs or is otherwise affiliated with such
     individual in connection therewith. The Section of Biomedical Image Analysis,
     Department of Radiology at the Universiy of Pennsylvania ("SBIA") hereby grants
     you, with right to sublicense, with respect to SBIA's rights in the software,
     and data, if any, which is the subject of this Software License (collectively,
     the "Software"), a royalty-free, non-exclusive license to use, reproduce, make
     derivative works of, display and distribute the Software, provided that:
     (a) you accept and adhere to all of the terms and conditions of this Software
     License; (b) in connection with any copy of or sublicense of all or any portion
     of the Software, all of the terms and conditions in this Software License shall
     appear in and shall apply to such copy and such sublicense, including without
     limitation all source and executable forms and on any user documentation,
     prefaced with the following words: "All or portions of this licensed product
     (such portions are the "Software") have been obtained under license from the
     Section of Biomedical Image Analysis, Department of Radiology at the University
     of Pennsylvania and are subject to the following terms and conditions:"
     (c) you preserve and maintain all applicable attributions, copyright notices
     and licenses included in or applicable to the Software; (d) modified versions
     of the Software must be clearly identified and marked as such, and must not
     be misrepresented as being the original Software; and (e) you consider making,
     but are under no obligation to make, the source code of any of your modifications
     to the Software freely available to others on an open source basis.

  2. The license granted in this Software License includes without limitation the
     right to (i) incorporate the Software into proprietary programs (subject to
     any restrictions applicable to such programs), (ii) add your own copyright
     statement to your modifications of the Software, and (iii) provide additional
     or different license terms and conditions in your sublicenses of modifications
     of the Software; provided that in each case your use, reproduction or
     distribution of such modifications otherwise complies with the conditions
     stated in this Software License.

  3. This Software License does not grant any rights with respect to third party
     software, except those rights that SBIA has been authorized by a third
     party to grant to you, and accordingly you are solely responsible for
     (i) obtaining any permissions from third parties that you need to use,
     reproduce, make derivative works of, display and distribute the Software,
     and (ii) informing your sublicensees, including without limitation your
     end-users, of their obligations to secure any such required permissions.

  4. The Software has been designed for research purposes only and has not been
     reviewed or approved by the Food and Drug Administration or by any other
     agency. YOU ACKNOWLEDGE AND AGREE THAT CLINICAL APPLICATIONS ARE NEITHER
     RECOMMENDED NOR ADVISED. Any commercialization of the Software is at the
     sole risk of the party or parties engaged in such commercialization.
     You further agree to use, reproduce, make derivative works of, display
     and distribute the Software in compliance with all applicable governmental
     laws, regulations and orders, including without limitation those relating
     to export and import control.

  5. The Software is provided "AS IS" and neither SBIA nor any contributor to
     the software (each a "Contributor") shall have any obligation to provide
     maintenance, support, updates, enhancements or modifications thereto.
     SBIA AND ALL CONTRIBUTORS SPECIFICALLY DISCLAIM ALL EXPRESS AND IMPLIED
     WARRANTIES OF ANY KIND INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF
     MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT.
     IN NO EVENT SHALL SBIA OR ANY CONTRIBUTOR BE LIABLE TO ANY PARTY FOR
     DIRECT, INDIRECT, SPECIAL, INCIDENTAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES
     HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY ARISING IN ANY WAY RELATED
     TO THE SOFTWARE, EVEN IF SBIA OR ANY CONTRIBUTOR HAS BEEN ADVISED OF THE
     POSSIBILITY OF SUCH DAMAGES. TO THE MAXIMUM EXTENT NOT PROHIBITED BY LAW OR
     REGULATION, YOU FURTHER ASSUME ALL LIABILITY FOR YOUR USE, REPRODUCTION,
     MAKING OF DERIVATIVE WORKS, DISPLAY, LICENSE OR DISTRIBUTION OF THE SOFTWARE
     AND AGREE TO INDEMNIFY AND HOLD HARMLESS SBIA AND ALL CONTRIBUTORS FROM
     AND AGAINST ANY AND ALL CLAIMS, SUITS, ACTIONS, DEMANDS AND JUDGMENTS ARISING
     THEREFROM.

  6. None of the names, logos or trademarks of SBIA or any of SBIA's affiliates
     or any of the Contributors, or any funding agency, may be used to endorse
     or promote products produced in whole or in part by operation of the Software
     or derived from or based on the Software without specific prior written
     permission from the applicable party.

  7. Any use, reproduction or distribution of the Software which is not in accordance
     with this Software License shall automatically revoke all rights granted to you
     under this Software License and render Paragraphs 1 and 2 of this Software
     License null and void.

  8. This Software License does not grant any rights in or to any intellectual
     property owned by SBIA or any Contributor except those rights expressly
     granted hereunder.


  PART C. MISCELLANEOUS
  ---------------------

  This Agreement shall be governed by and construed in accordance with the laws
  of The Commonwealth of Pennsylvania without regard to principles of conflicts
  of law. This Agreement shall supercede and replace any license terms that you
  may have agreed to previously with respect to Software from SBIA.



CMake Modules
=============

  ExternalData.cmake
  ------------------

  Copyright 2010-2011 Kitware, Inc.
  All rights reserved.
 
  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:
 
  * Redistributions of source code must retain the above copyright
    notice, this list of conditions and the following disclaimer.
 
  * Redistributions in binary form must reproduce the above copyright
    notice, this list of conditions and the following disclaimer in the
    documentation and/or other materials provided with the distribution.
 
  * Neither the names of Kitware, Inc., the Insight Software Consortium,
    nor the names of their contributors may be used to endorse or promote
    products derived from this software without specific prior written
    permission.
 
  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
  "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
  LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
  A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
  HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
  LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
  DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
  THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.



Tools
=====

  Doxygen Filter
  --------------

  File(s): src/tools/doxyfilter.pl

  Doxygen Pre-Processor for Perl
  Copyright (C) 2002  Bart Schuller
  Copyright (C) 2006  Phinex Informatik AG
  Copyright (C) 2011  University of Pennsylvania
  All Rights Reserved
  
  Doxygen Filter is free software; you can redistribute it and/or modify
  it under the same terms as Perl itself.
  
  Larry Wall's 'Artistic License' for perl can be found in
  http://www.perl.com/pub/a/language/misc/Artistic.html


  File(s): src/tools/DoxyGen/Filter.pm
           src/tools/DoxyGen/PerlFilter.pm

  Doxygen Pre-Processor for Perl
  Copyright (C) 2002  Bart Schuller
  Copyright (C) 2006  Phinex Informatik AG
  All Rights Reserved
  
  Doxygen Filter is free software; you can redistribute it and/or modify
  it under the same terms as Perl itself.
  
  Larry Wall's 'Artistic License' for perl can be found in
  http://www.perl.com/pub/a/language/misc/Artistic.html


  Python Implementation of which Command
  --------------------------------------

  File(s): src/tools/which.py

  Copyright (c) 2002-2007 ActiveState Software Inc.
 
  Permission is hereby granted, free of charge, to any person obtaining a
  copy of this software and associated documentation files (the
  "Software"), to deal in the Software without restriction, including
  without limitation the rights to use, copy, modify, merge, publish,
  distribute, sublicense, and/or sell copies of the Software, and to
  permit persons to whom the Software is furnished to do so, subject to
  the following conditions:
 
  The above copyright notice and this permission notice shall be included
  in all copies or substantial portions of the Software.
 
  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
  OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
  MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
  IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
  CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
  TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
  SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
 

  Sphinx Extensions
  -----------------

  File(s): src/sphinx/extensions/breathe/*

  Copyright (c) 2009, Michael Jones
  All rights reserved.
 
  Redistribution and use in source and binary forms, with or without modification,
  are permitted provided that the following conditions are met:
 
  * Redistributions of source code must retain the above copyright notice,
    this list of conditions and the following disclaimer.
  * Redistributions in binary form must reproduce the above copyright notice,
    this list of conditions and the following disclaimer in the documentation
    and/or other materials provided with the distribution.
  * The names of its contributors may not be used to endorse or promote
    products derived from this software without specific prior written
    permission.
 
  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
  ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
  WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
  DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
  ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
  (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
  LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
  ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.



C++ Utilities
=============

  TCLAP - Templatized C++ Command Line Parser Library
  ---------------------------------------------------

  File(s): include/sbia/tclap/*

  Copyright (c) 2003 Michael E. Smoot 

  Permission is hereby granted, free of charge, to any person 
  obtaining a copy of this software and associated documentation 
  files (the "Software"), to deal in the Software without restriction, 
  including without limitation the rights to use, copy, modify, merge, 
  publish, distribute, sublicense, and/or sell copies of the Software, 
  and to permit persons to whom the Software is furnished to do so, 
  subject to the following conditions:

  The above copyright notice and this permission notice shall be 
  included in all copies or substantial portions of the Software.

  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, 
  EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES 
  OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND 
  NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS 
  BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN 
  AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR 
  IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN 
  THE SOFTWARE.


  Google Test and Google Mock
  ---------------------------

  File(s): include/sbia/gtest/gtest.h

  Copyright 2005, Google Inc.
  All rights reserved.

  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:

  * Redistributions of source code must retain the above copyright notice,
    this list of conditions and the following disclaimer.

  * Redistributions in binary form must reproduce the above copyright notice,
    this list of conditions and the following disclaimer in the documentation
    and/or other materials provided with the distribution.

  * Neither the name of Google Inc. nor the names of its contributors may be
    used to endorse or promote products derived from this software without
    specific prior written permission.

  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
  "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
  LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
  A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
  OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
  LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
  DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
  THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.


  File(s): include/sbia/gmock/gmock.h

  Copyright 2007, Google Inc.
  All rights reserved.

  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:

  * Redistributions of source code must retain the above copyright notice,
    this list of conditions and the following disclaimer.

  * Redistributions in binary form must reproduce the above copyright notice,
    this list of conditions and the following disclaimer in the documentation
    and/or other materials provided with the distribution.

  * Neither the name of Google Inc. nor the names of its contributors may be
    used to endorse or promote products derived from this software without
    specific prior written permission.

  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
  "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
  LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
  A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
  OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
  LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
  DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
  THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.


  File(s): src/utilities/cxx/test.cxx
           src/utilities/cxx/test_main.cxx

  Copyright 2008, Google Inc.
  All rights reserved.

  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:

  * Redistributions of source code must retain the above copyright notice,
    this list of conditions and the following disclaimer.

  * Redistributions in binary form must reproduce the above copyright notice,
    this list of conditions and the following disclaimer in the documentation
    and/or other materials provided with the distribution.

  * Neither the name of Google Inc. nor the names of its contributors may be
    used to endorse or promote products derived from this software without
    specific prior written permission.

  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
  "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
  LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
  A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
  OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
  LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
  DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
  THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.



Java Utilities
==============

  JTap
  ----

  File(s): src/utilities/java/JTap.java

  Copyright (c) Patrick LeBoutillier.
  Copyright (c) 2011 University of Pennsylvania.
  All rights reserved.

  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  any later version.
 
  This program is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.



Python Utilities
================

  which.py
  --------

  File(s): src/tools/which.py

  Copyright (c) 2002-2007 ActiveState Software Inc.
 
  Permission is hereby granted, free of charge, to any person obtaining a
  copy of this software and associated documentation files (the
  "Software"), to deal in the Software without restriction, including
  without limitation the rights to use, copy, modify, merge, publish,
  distribute, sublicense, and/or sell copies of the Software, and to
  permit persons to whom the Software is furnished to do so, subject to
  the following conditions:
 
  The above copyright notice and this permission notice shall be included
  in all copies or substantial portions of the Software.
 
  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
  OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
  MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
  IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
  CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
  TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
  SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.



Perl Utilities
==============

  File::Which
  -----------

  File(s): src/utilities/perl/File/Which.pm

  Copyright 2002 Per Einar Ellefsen.

  Some parts copyright 2009 Adam Kennedy.

  This program is free software; you can redistribute it and/or modify
  it under the same terms as Perl itself.



BASH Utilities
==============

  shFlags
  -------

  File(s): src/utilities/bash/shflags.sh

  Copyright 2008 Kate Ward.
  Copyright 2011 University of Pennsylvania.
  All Rights Reserved.
 
  Released under the LGPL (GNU Lesser General Public License)


  shTap
  -----
 
  File(s): src/utilities/bash/shtap.sh

  Copyright (c) Patrick LeBoutillier.
  Copyright (c) 2011 University of Pennsylvania.
  All rights reserved.
 
  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  any later version.
 
  This program is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.