validation.pbs

#!/bin/bash

#PBS -l walltime=72:00:00,nodes=1:ppn=1
#PBS -joe .
#PBS -d .
#PBS -l vmem=80g,mem=80g
#PBS -N validation


#please change the following three variables according to your settings, as the recent crg2 repo is not copied over here

CP="/hpf/largeprojects/ccm_dccforge/dccdipg/Common/snakemake";
PBS=~/crg2/pbs_profile;

source /hpf/largeprojects/ccm_dccforge/dccdipg/Common/anaconda3/etc/profile.d/conda.sh
conda activate snakemake

snakemake --use-conda -s ~/crg2/validation.Snakefile --conda-prefix $CP  --profile $PBS -pr