diff --git a/Docs/ChangeLog.md b/Docs/ChangeLog.md
index 5d99a59..b55b232 100644
--- a/Docs/ChangeLog.md
+++ b/Docs/ChangeLog.md
@@ -1,3 +1,8 @@
+# Version: 1.119.9
+## Date: 2024-12-5
+### Changes:
+- Fix: Fixed the bug of when plot upset plot with slecetion, the items with zero value was not removed.
+
 
 # Version: 1.119.8
 ## Date: 2024-12-5
diff --git a/metax/taxafunc_ploter/basic_plot.py b/metax/taxafunc_ploter/basic_plot.py
index d5b44a7..2976aa6 100644
--- a/metax/taxafunc_ploter/basic_plot.py
+++ b/metax/taxafunc_ploter/basic_plot.py
@@ -647,6 +647,8 @@ def plot_upset(self, df, title_name='Table', width=12, height=6,  font_size=10,
         """
 
         df = df.copy()
+        # remove all zero rows
+        df = df.loc[(df != 0).any(axis=1)]
 
         if plot_sample:
             # Create a binary matrix (boolean format) with samples as groups
diff --git a/metax/utils/version.py b/metax/utils/version.py
index 50e924d..d65f69f 100644
--- a/metax/utils/version.py
+++ b/metax/utils/version.py
@@ -1,2 +1,2 @@
-__version__ = '1.119.8'
+__version__ = '1.119.9'
 API_version = '4'
\ No newline at end of file
diff --git a/pyproject.toml b/pyproject.toml
index 90a66cc..d2eef34 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "MetaXTools"
-version = "1.119.8"
+version = "1.119.9"
 description = "MetaXTools is a novel tool for linking peptide sequences with taxonomic and functional information in Metaproteomics."
 readme = "README_PyPi.md"
 license = { text = "NorthOmics" }