Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

undefined reference to symbol 'pfm_get_pmu_info' #68

Open
Alessandro-Barbieri opened this issue Jun 5, 2022 · 1 comment
Open

undefined reference to symbol 'pfm_get_pmu_info' #68

Alessandro-Barbieri opened this issue Jun 5, 2022 · 1 comment

Comments

@Alessandro-Barbieri
Copy link

configured with
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-silent-rules --disable-static --docdir=/usr/share/doc/extrae-4.0.1 --htmldir=/usr/share/doc/extrae-4.0.1/html --with-sysroot=/ --libdir=/usr/lib64 --disable-mic --disable-pmapi --disable-static --enable-shared --without-cupti --without-gm --without-mx --datadir=/var/tmp/portage/sys-cluster/extrae-4.0.1/temp --datarootdir=/var/tmp/portage/sys-cluster/extrae-4.0.1/temp --with-librt=/usr --with-mpi=/usr --with-papi=/usr --with-unwind=/usr --disable-doc --disable-heterogeneous --disable-inotify --enable-instrument_dynamic-memory --enable-instrument_io --enable-instrument_syscall --disable-merge-in-trace --disable-nanos --disable-online --enable-openmp --enable-parallel-merge --disable-pebs-sampling --disable-peruse --enable-posix-clock --disable-pthread --disable-sampling --enable-single-mpi-lib --disable-smpss --enable-xml --without-java-aspectj-weaver --without-java-aspectj --without-clustering --without-boost --without-dyninst --without-dwarf --without-elf --without-java-jdk --without-memkind --without-synapse --without-opencl --without-openshmem --without-fft --without-spectral

the build fails with

/bin/sh ../../libtool  --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc -I../../include -I../../src/common -I../../src/tracer -I../../src/tracer/wrappers/API -I../../src/tracer/clocks -I../../src/tracer/hwc -O -g -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fno-optimize-sibling-calls -Wall -W   -L/usr/lib64  -R/usr/lib64 -lpapi -lpfm  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o extrae-cmd extrae_cmd-extrae-cmd.o extrae_cmd-extrae-cmd-init.o extrae_cmd-extrae-cmd-emit.o extrae_cmd-extrae-cmd-fini.o ../../src/tracer/libseqtrace.la ../../src/merger/libmpi2prv.la -lm -L/usr/lib64 -R/usr/lib64 -lbfd -L/usr/lib64 -R/usr/lib64 -liberty   
libtool: link: x86_64-pc-linux-gnu-gcc -I../../include -I../../src/common -I../../src/tracer -I../../src/tracer/wrappers/API -I../../src/tracer/clocks -I../../src/tracer/hwc -O -g -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fno-optimize-sibling-calls -Wall -W -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/extrae-cmd extrae_cmd-extrae-cmd.o extrae_cmd-extrae-cmd-init.o extrae_cmd-extrae-cmd-emit.o extrae_cmd-extrae-cmd-fini.o  -L/usr/lib64 -Wl,--as-needed ../../src/tracer/.libs/libseqtrace.so -lpapi -lpfm -lunwind -lxml2 -ldl -lrt ../../src/merger/.libs/libmpi2prv.a -lm -lbfd -liberty -Wl,-rpath -Wl,/usr/lib64
/usr/lib/gcc/x86_64-pc-linux-gnu/11.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../../src/merger/.libs/libmpi2prv.a(libmpi2prv_la-HardwareCounters.o): undefined reference to symbol 'pfm_get_pmu_info'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libpfm.so: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status

See https://bugs.gentoo.org/849617
log https://bugs.gentoo.org/attachment.cgi?id=782648

@emercadal
Copy link
Contributor

emercadal commented Jun 7, 2022

This seems indeed a misdeclaration of the extrae_cmd_LDADD variable. Adding @PAPI_LIBS@ without testing PAPI availability first may raise further problems. A possible fix would be to change src/cmd-lineMakefile.am l.30 and l.36 extrae_cmd_LDFLAGS to extrae_cmd_LDADD without changing its contents.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants