From 16ac5ed2c58d95fa55f8d2f2ac4c8c30f4cfa97d Mon Sep 17 00:00:00 2001
From: Danny Park <dpark@broadinstitute.org>
Date: Mon, 25 Nov 2024 10:13:20 -0500
Subject: [PATCH] try adding bbtools back

---
 requirements-conda.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements-conda.txt b/requirements-conda.txt
index 3fe206ee..cb1450c8 100644
--- a/requirements-conda.txt
+++ b/requirements-conda.txt
@@ -1,4 +1,4 @@
-#bbmap>=39.13
+bbmap=39.10  # more recent versions pin openjdk>=11 which is incompatible with gatk=3.8
 gap2seq=3.1.1a
 mafft>=7.525
 mummer4>=4.0.0rc1