cpg0023-mpi

[shntnu]

Segmentation/ Feature extraction is being performed by (Cimini lab / Carpenter-Singh lab)
Profile creation is being performed by (Cimini lab / Carpenter-Singh lab)
Data can be public in RODA Immediately
Imaging Platform project tag = 2021_09_21_MPI

Update as generated:
[Link to profile repo]
[Link to publication repo]
[cellpainting-gallery identifier]

• Metadata collection form filled out by collaborator or Imaging Platform member (https://airtable.com/shrVxz9DcoMlDoCBI)
• Metadata completely filled out in Project Profiler Database (Imaging Platform internal use only)
• Segmentation/Feature extraction complete
• Profiling complete

Transfer to CellPainting Gallery:

• Upload data to RODA (is private by default)
• Run validation script to ensure completion (https://github.com/jump-cellpainting/data-validation)
• Update cellpainting-gallery/README.md
• Make RODA entry public

If data is being published, prepare for publication:

• Run Distributed-BioFormats2Raw to create .ome.zarr files
• Upload (meta)data to IDR (images remain hosted in cellpainting-gallery).

Once published:

• Make IDR entry public
• Update cellpainting-gallery/README.md and open-data-registry/cellpainting-gallery.yml to reflect publication
• Move this Issue from cellpainting-gallery-private to cellpainting-gallery. This step can be performed at an earlier point if it needs inputs from an external collaborator.