From ab675b8660593f249316a184d600292c098033c1 Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Tue, 14 Nov 2023 16:43:49 +0000
Subject: [PATCH] Direct filepaths to be absolute, since tests are not
 packaged.

---
 tests/tests/test_unit/test_analyse.py | 15 +++++++++------
 tox.ini                               |  2 +-
 2 files changed, 10 insertions(+), 7 deletions(-)

diff --git a/tests/tests/test_unit/test_analyse.py b/tests/tests/test_unit/test_analyse.py
index 01b3910a..12c107e1 100644
--- a/tests/tests/test_unit/test_analyse.py
+++ b/tests/tests/test_unit/test_analyse.py
@@ -1,5 +1,5 @@
 import filecmp
-from importlib.resources import files
+import os
 from pathlib import Path
 
 import pytest
@@ -37,15 +37,18 @@ def structures_with_points():
 def test_get_region_totals(tmp_path, points, structures_with_points):
     """Regression test for get_region_totals for pandas 1.5.3 -> 2.1.3+.
     pd.Dataframe.append was deprecated and remove in this time."""
-    volumes_path = files("cellfinder").joinpath(
-        "../tests/data/analyse/volumes.csv"
+    OUTPUT_DATA_LOC = (
+        Path(os.path.dirname(os.path.abspath(__file__))) / "../../data/analyse"
+    ).resolve()
+
+    volumes_path = OUTPUT_DATA_LOC / "volumes.csv"
+    expected_output = (
+        OUTPUT_DATA_LOC / "region_totals_regression_pandas1_5_3.csv"
     )
+
     output_path = Path(tmp_path / "tmp_region_totals.csv")
     get_region_totals(
         points, structures_with_points, volumes_path, output_path
     )
     assert output_path.exists()
-    expected_output = files("cellfinder").joinpath(
-        "../tests/data/analyse/region_totals_regression_pandas1_5_3.csv"
-    )
     assert filecmp.cmp(output_path, expected_output)
diff --git a/tox.ini b/tox.ini
index 78a015dc..d34ad63e 100644
--- a/tox.ini
+++ b/tox.ini
@@ -14,7 +14,7 @@ INPUT_COREDEV =
     true: coredev
 
 [testenv]
-commands = pytest -v --cov=./ --cov-report=xml
+commands = pytest {toxinidir} -v --cov=./ --cov-report=xml
 deps =
     pytest-cov
     pytest