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_config.yml
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/
_config.yml
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name: Bedford Lab Research
description: Science updates on evolution, epidemiology and immunology from the Bedford lab at the Fred Hutch
url: http://bedford.io
markdown: kramdown
permalink: /:categories/:title/
future: true
sass:
sass_dir: css
plugins:
- jekyll-gzip
- jekyll-twitter-plugin
gzip:
replace_files: true
exclude:
- "*.branches"
- "*.class"
- "*.cpp"
- "*.csv"
- "*.fasta"
- "*.gz"
- "*.h"
- "*.hh"
- "*.ipynb"
- "*.jar"
- "*.java"
- "*.kml"
- "*.log"
- "*.mcc"
- "*.nb"
- "*.newick"
- "*.nex"
- "*.py"
- "*.R"
- "*.rb"
- "*.Rmd"
- "*.tiff"
- "*.tips"
- "*.trees"
- "*.tsv"
- "*.txt"
- "*.xml"
- "*.zip"
- "Gemfile"
- "Gemfile.lock"
- "projects/siv-cst/beast/main/empiricalTrees/xml/*"
- "projects/siv-cst/beast/supplement/discreteTraits/xml/*"
- "projects/siv-cst/beast/supplement/empiricalTrees/xml/*"
- "projects/dengue-antigenic-dynamics/titer_model/seasia_output/*"
readmes:
- blab/chikv
- blab/dengue-antigenic-dynamics
- blab/flu-forecasting
- blab/genomic-horizon
- blab/h3n2-reassortment
- blab/h5n1-cambodia
- blab/mers-structure
- blab/mumps-wa-phylodynamics
- blab/ncov-cryptic-transmission
- blab/ncov-phylodynamics
- blab/ncov-wa-d614g
- blab/ncov-wa-phylodynamics
- blab/nextflu
- blab/roka
- blab/seasonal-cov-adaptive-evolution
- blab/siv-cst
- blab/unsampled
- blab/yellow-fever
- blab/zika-colombia
- blab/zika-usvi
- seattleflu/id3c
- trvrb/antigen
- trvrb/PACT
- trvrb/stem
projects:
- blab/global-migration
- blab/mitii
- blab/mumps-seq
- blab/zika-seq
- trvrb/ancestry
- trvrb/coaltrace
- trvrb/divergence
- trvrb/dynamics-practical
- trvrb/flutrace
- trvrb/gs541-phylodynamics
- trvrb/haplotypes
- trvrb/medium-data
- trvrb/phylodynamics-lecture
- trvrb/sctrace
- trvrb/sismid