From cc4f19f9b075552f4d9cdb1ae554134d6a7afe65 Mon Sep 17 00:00:00 2001
From: Wout Bittremieux <wout@bittremieux.be>
Date: Tue, 16 Apr 2024 20:22:17 +0200
Subject: [PATCH 1/2] Replace appdirs by platformdirs

Fixes #62.
---
 docs/src/install.md        | 2 +-
 environment.yml            | 2 +-
 setup.cfg                  | 2 +-
 spectrum_utils/proforma.py | 4 ++--
 4 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/docs/src/install.md b/docs/src/install.md
index 3829c84..a63f53e 100644
--- a/docs/src/install.md
+++ b/docs/src/install.md
@@ -18,13 +18,13 @@ spectrum_utils supports Python version 3.8 and above.
 
 spectrum_utils has the following third-party dependencies:
 
-- [appdirs](https://github.com/ActiveState/appdirs)
 - [fastobo](https://fastobo.readthedocs.io/)
 - [Lark](https://lark-parser.readthedocs.io/)
 - [Matplotlib](https://matplotlib.org/)
 - [Numba](http://numba.pydata.org/)
 - [NumPy](https://www.numpy.org/)
 - [Pandas](https://pandas.pydata.org/)
+- [platformdirs](https://github.com/platformdirs/platformdirs)
 - [Pyteomics](https://pyteomics.readthedocs.io/)
 - [Vega-Altair](https://altair-viz.github.io/)
 
diff --git a/environment.yml b/environment.yml
index 081bf14..98ee250 100644
--- a/environment.yml
+++ b/environment.yml
@@ -5,12 +5,12 @@ channels:
   - conda-forge
 dependencies:
   - altair
-  - appdirs
   - fastobo
   - lark>=1.0
   - matplotlib
   - numba>=0.57
   - numpy
   - pandas
+  - platformdirs
   - pyteomics>=4.5
   - python>=3.8
diff --git a/setup.cfg b/setup.cfg
index b1478ce..6186d4a 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -24,12 +24,12 @@ packages = find:
 include_package_data = True
 python_requires = >=3.8
 install_requires =
-    appdirs
     fastobo
     lark>=1.0
     matplotlib>=3.5
     numba>=0.57
     numpy
+    platformdirs
     pyteomics>=4.5
 
 [options.extras_require]
diff --git a/spectrum_utils/proforma.py b/spectrum_utils/proforma.py
index 5f4f8d2..234424c 100644
--- a/spectrum_utils/proforma.py
+++ b/spectrum_utils/proforma.py
@@ -24,7 +24,7 @@
 )
 from urllib.error import URLError
 
-import appdirs
+import platformdirs
 import fastobo
 import lark
 
@@ -35,7 +35,7 @@
 
 
 # Set to None to disable caching.
-cache_dir = appdirs.user_cache_dir("spectrum_utils", False)
+cache_dir = platformdirs.user_cache_dir("spectrum_utils", False)
 
 
 # noinspection PyArgumentList

From 5d6dd83f0b8e11d741cbbe49e04101194bafd8b5 Mon Sep 17 00:00:00 2001
From: Wout Bittremieux <wout@bittremieux.be>
Date: Tue, 16 Apr 2024 20:45:39 +0200
Subject: [PATCH 2/2] Fix linting GitHub Action

---
 .github/workflows/lint.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
index da40b8f..0757a94 100644
--- a/.github/workflows/lint.yml
+++ b/.github/workflows/lint.yml
@@ -22,8 +22,8 @@ jobs:
 
       - name: Lint with black
         uses: psf/black@stable
-      with:
-        options: "--check --diff --line-length 79"
+        with:
+            options: "--check --diff --line-length 79"
 
       - name: Check for debugging print statements
         run: |