wheels_linux.yml

name: Release Linux

on:
  push:
    branches:
      - dev
    tags:
      - 'v**'
  pull_request:
    branches:
      - dev

  workflow_dispatch:

jobs:
  wheel:
    runs-on: ubuntu-latest
    env:
        SMOLDYN_PYPI_TOKEN: ${{ secrets.SMOLDYN_PYPI_TOKEN }}
    steps:
      - uses: actions/checkout@v2
      - name: Building wheel in ManuLinux container
        run: |
            ls -ltR
            export PYPI_PASSWORD=$SMOLDYN_PYPI_TOKEN
            python3 setup.py sdist bdist_wheel
      # - name: Building wheel in ManuLinux container
      #   run: |
      #     ls -ltR
      #     export PYPI_PASSWORD=$SMOLDYN_PYPI_TOKEN
      #     cd scripts && make wheels

      # BioSimulators
      - name: Build BioSimulators Docker image
        env:
          TAG: ${{ github.ref }}
        run: |
          cp ~/wheelhouse/smoldyn-*-cp39-*.whl scripts/
          cd scripts
          if [[ "${TAG}" =~ ^refs/tags/ ]]; then
            VERSION="${TAG/refs\/tags\/v/}"
          else
            WHEEL_PATH=$(ls smoldyn*.whl)
            VERSION=$(echo $WHEEL_PATH | cut -d - -f 2- | cut -d . -f 1-2)
          fi
          REVISION=$(git rev-parse HEAD)
          CREATED=$(date --rfc-3339=seconds | sed 's/ /T/')
          docker build \
            --file Dockerfile-BioSimulators \
            --tag ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:${VERSION} \
            --tag ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:latest \
            --build-arg VERSION=${VERSION} \
            --label org.opencontainers.image.revision=${REVISION} \
            --label org.opencontainers.image.created=${CREATED} \
            .

      - name: Push BioSimulators Docker image
        env:
          TAG: ${{ github.ref }}
        run: |
          cd scripts
          if [[ "${TAG}" =~ ^refs/tags/ ]]; then
            VERSION="${TAG/refs\/tags\/v/}"
          else
            WHEEL_PATH=$(ls smoldyn*.whl)
            VERSION=$(echo $WHEEL_PATH | cut -d - -f 2- | cut -d . -f 1-2)
          fi

          (
              docker login ghcr.io \
                --username ${{ secrets.BIOSIMULATORS_GH_USERNAME }} \
                --password ${{ secrets.BIOSIMULATORS_GH_TOKEN }}
              docker push ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:${VERSION}
              docker push ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:latest
          ) || echo "The BioSimulators Docker image could not be pushed. Check that the BIOSIMULATORS_GH_USERNAME and BIOSIMULATORS_GH_TOKEN secrets are defined."

      - name: Submit Smoldyn to BioSimulators
        if: startsWith(github.ref, 'refs/tags/v') || github.event_name == 'workflow_dispatch'
        env:
          TAG: ${{ github.ref }}
        run: |
          cd scripts
          if [[ "${TAG}" =~ ^refs/tags/ ]]; then
            VERSION="${TAG/refs\/tags\/v/}"
          else
            WHEEL_PATH=$(ls smoldyn*.whl)
            VERSION=$(echo $WHEEL_PATH | cut -d - -f 2- | cut -d . -f 1-2)
          fi
          REVISION=$(git rev-parse HEAD)
          IMAGE_DIGEST=$(docker image inspect ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:${VERSION} | jq -r '.[0].RepoDigests[0]' | cut -d "@" -f 2-)

          (
              curl \
                -X POST \
                -u ${{ secrets.BIOSIMULATORS_GH_USERNAME }}:${{ secrets.BIOSIMULATORS_GH_TOKEN }} \
                -H "Accept: application/vnd.github.v3+json" \
                https://api.github.com/repos/biosimulators/Biosimulators/issues \
                -d "{\"labels\": [\"Validate/submit simulator\"], \"title\": \"Submit Smoldyn ${VERSION}\", \"body\": \"---\nid: smoldyn\nversion: \\\"${VERSION}\\\"\nspecificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/${REVISION}/biosimulators.json\nspecificationsPatch:\n  version: \\\"${VERSION}\\\"\n  image:\n    url: ghcr.io/ssandrews/smoldyn/biosimulators_smoldyn:${VERSION}\n    digest: \\\"${IMAGE_DIGEST}\\\"\nvalidateImage: true\ncommitSimulator: true\n\n---\"}"
            ) || echo "Failed to create issue. Probably secrets are not available?"