From f330196733574bb642630017d6fa418128a6c411 Mon Sep 17 00:00:00 2001 From: SamGijsen <44772298+SamGijsen@users.noreply.github.com> Date: Thu, 9 Nov 2023 11:21:38 +0100 Subject: [PATCH 1/3] Missing compute node command, episode-0.md --- bih-cluster/docs/first-steps/episode-0.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bih-cluster/docs/first-steps/episode-0.md b/bih-cluster/docs/first-steps/episode-0.md index 4fca65acf..a30eb5777 100644 --- a/bih-cluster/docs/first-steps/episode-0.md +++ b/bih-cluster/docs/first-steps/episode-0.md @@ -45,7 +45,7 @@ In preparation for our first steps tutorial series, we would like you to install In general the users on the cluster will manage their own software with the help of conda. If you haven't done so so far, please [follow the instructions in installing conda](../best-practice/software-installation-with-conda.md) first. The only premise is that you are able to [log into the cluster](../connecting/configure-ssh/linux.md). -Make also sure that you are logged in to a computation node using ``. +Make also sure that you are logged in to a computation node using `srun -p long --time 7-00 --mem=8G --ntasks=8 --pty bash -i`. Now we will create a new environment, so as to not interfere with your current or planned software stack, and install into it all the From 1cb92d8c8943568479b45dfde860625a8caa7ce9 Mon Sep 17 00:00:00 2001 From: SamGijsen <44772298+SamGijsen@users.noreply.github.com> Date: Thu, 9 Nov 2023 11:25:54 +0100 Subject: [PATCH 2/3] Remove double header, prerequisites.md --- bih-cluster/docs/connecting/configure-ssh/prerequisites.md | 4 ---- 1 file changed, 4 deletions(-) diff --git a/bih-cluster/docs/connecting/configure-ssh/prerequisites.md b/bih-cluster/docs/connecting/configure-ssh/prerequisites.md index 5fe5e535c..1cfe32bc9 100644 --- a/bih-cluster/docs/connecting/configure-ssh/prerequisites.md +++ b/bih-cluster/docs/connecting/configure-ssh/prerequisites.md @@ -22,7 +22,3 @@ The username for accessing the cluster is composed of your username at your prim - Access to the cluster is granted by BIH HPC IT through hpc-helpdesk@bih-charite.de - Access to the MDC jail node is managed by MDC IT - -### What is my username? - -You simply use your Charite user name! From 648033dd0ce0e14eca189868d66d508c85278adc Mon Sep 17 00:00:00 2001 From: SamGijsen <44772298+SamGijsen@users.noreply.github.com> Date: Tue, 14 Nov 2023 13:33:32 +0100 Subject: [PATCH 3/3] Reduced resources, episode-0.md --- bih-cluster/docs/first-steps/episode-0.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bih-cluster/docs/first-steps/episode-0.md b/bih-cluster/docs/first-steps/episode-0.md index a30eb5777..04b633668 100644 --- a/bih-cluster/docs/first-steps/episode-0.md +++ b/bih-cluster/docs/first-steps/episode-0.md @@ -45,7 +45,7 @@ In preparation for our first steps tutorial series, we would like you to install In general the users on the cluster will manage their own software with the help of conda. If you haven't done so so far, please [follow the instructions in installing conda](../best-practice/software-installation-with-conda.md) first. The only premise is that you are able to [log into the cluster](../connecting/configure-ssh/linux.md). -Make also sure that you are logged in to a computation node using `srun -p long --time 7-00 --mem=8G --ntasks=8 --pty bash -i`. +Make also sure that you are logged in to a computation node using `srun -p medium --time 1-00 --mem=4G --ntasks=1 --pty bash -i`. Now we will create a new environment, so as to not interfere with your current or planned software stack, and install into it all the