Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error reading IBAQ file #26

Open
ypriverol opened this issue Dec 8, 2023 · 0 comments
Open

Error reading IBAQ file #26

ypriverol opened this issue Dec 8, 2023 · 0 comments

Comments

@ypriverol
Copy link
Member

Traceback (most recent call last):
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/bin/quantmsio_cli", line 33, in <module>
    sys.exit(load_entry_point('quantmsio==0.0.3', 'console_scripts', 'quantmsio_cli')())
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/quantmsio-0.0.3-py3.11.egg/quantms_io/quantmsio_cli.py", line 58, in quantms_io_main
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/click/core.py", line 1157, in __call__
    return self.main(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/click/core.py", line 1078, in main
    rv = self.invoke(ctx)
         ^^^^^^^^^^^^^^^^
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/click/core.py", line 1688, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/click/core.py", line 1688, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/click/core.py", line 1434, in invoke
    return ctx.invoke(self.callback, **ctx.params)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/click/core.py", line 783, in invoke
    return __callback(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/click/decorators.py", line 33, in new_func
    return f(get_current_context(), *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/quantmsio-0.0.3-py3.11.egg/quantms_io/commands/statistics.py", line 51, in feature_file_statistics
    ---------------------------------
            ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/quantmsio-0.0.3-py3.11.egg/quantms_io/commands/statistics.py", line 41, in write_absolute_stats
    
  File "/hps/software/users/juan/pride/anaconda3/envs/quantmsio/lib/python3.11/site-packages/quantmsio-0.0.3-py3.11.egg/quantms_io/core/statistics.py", line 43, in get_number_of_samples
    2.8333333333...
                ^^^^
ValueError: No SampleID column found in the ibaq file

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant