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SDRF error: Value is not match with ontology #704

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ChuweiLin opened this issue Apr 22, 2024 · 2 comments
Open

SDRF error: Value is not match with ontology #704

ChuweiLin opened this issue Apr 22, 2024 · 2 comments
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@ChuweiLin
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ChuweiLin commented Apr 22, 2024

I always use the same SDRF temple. 2024-4-4 it worked, no error, but today it said 'Value is not match with ontology'. I can't tell what is wrong here. I am using px-submission 2.7.3
Here is the file:
sdrf_lysate.txt

2024-04-22 14:54:18,220 INFO [pool-1-thread-3] u.a.e.p.s.v.Main [Main.java:111] ERROR : Value is not match with ontology', value='nt=orbitrap eclipse', row=1, column='comment[instrument]'
2024-04-22 14:54:18,221 INFO [pool-1-thread-3] u.a.e.p.s.v.Main [Main.java:111] ERROR : Value is not match with ontology', value='nt=trypsin', row=1, column='comment[cleavage agent details]'
2024-04-22 14:54:18,221 INFO [pool-1-thread-3] u.a.e.p.s.v.Main [Main.java:111] ERROR : Value is not match with ontology', value='nt=lys-c', row=1, column='comment[cleavage agent details]'
2024-04-22 14:54:18,221 ERROR [pool-1-thread-3] u.a.e.p.g.t.FileScanAndValidationTask [FileScanAndValidationTask.java:316] Error in file sdrf.tsvPlease make sure you upload proper EXPERIMENTAL_DESIGN file sdrf.tsv
2024-04-22 14:54:18,221 ERROR [pool-1-thread-3] u.a.e.p.g.t.FileScanAndValidationTask [FileScanAndValidationTask.java:318] Value is not match with ontology
2024-04-22 14:54:18,221 ERROR [pool-1-thread-3] u.a.e.p.g.t.FileScanAndValidationTask [FileScanAndValidationTask.java:318] Value is not match with ontology
2024-04-22 14:54:18,221 ERROR [pool-1-thread-3] u.a.e.p.g.t.FileScanAndValidationTask [FileScanAndValidationTask.java:318] Value is not match with ontology

@ypriverol ypriverol added the bug Something isn't working label Apr 23, 2024
@deeptijk
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@ChuweiLin could you please attach your sdrf file

@ypriverol
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Also @ChuweiLin the tool that you are using to validate the file?

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