Feature/vdyp 443

lib/pom.xml

@@ -34,6 +34,7 @@
 		<module>vdyp-sindex</module>
 		<module>vdyp-si32</module>
 		<module>vdyp-forward</module>
+		<module>vdyp-back</module>
 	</modules>
 
 	<build>

lib/vdyp-back/pom.xml

@@ -0,0 +1,116 @@
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+				 xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+
+	<artifactId>vdyp-back</artifactId>
+	<packaging>jar</packaging>
+
+	<name>Variable Density Yield Project - Back</name>
+	<url>http://maven.apache.org</url>
+
+	<parent>
+		<groupId>ca.bc.gov.nrs.vdyp</groupId>
+		<artifactId>vdyp-lib</artifactId>
+		<version>0.0.1-SNAPSHOT</version>
+	</parent>
+
+	<dependencies>
+		<dependency>
+			<groupId>ca.bc.gov.nrs.vdyp</groupId>
+			<artifactId>vdyp-common</artifactId>
+			<version>0.0.1-SNAPSHOT</version>
+		</dependency>
+		<dependency>
+			<groupId>ca.bc.gov.nrs.vdyp</groupId>
+			<artifactId>vdyp-forward</artifactId>
+			<version>0.0.1-SNAPSHOT</version>
+		</dependency>
+
+		<dependency>
+			<groupId>ca.bc.gov.nrs.vdyp</groupId>
+			<artifactId>vdyp-common</artifactId>
+			<version>${project.version}</version>
+			<type>test-jar</type>
+			<scope>test</scope>
+		</dependency>
+		<dependency>
+			<groupId>ca.bc.gov.nrs.vdyp</groupId>
+			<artifactId>vdyp-forward</artifactId>
+			<version>${project.version}</version>
+			<type>test-jar</type>
+			<scope>test</scope>
+		</dependency>
+
+		<dependency>
+		    <groupId>org.apache.commons</groupId>
+		    <artifactId>commons-lang3</artifactId>
+		</dependency>
+
+		<dependency>
+			<groupId>org.slf4j</groupId>
+			<artifactId>slf4j-api</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.slf4j</groupId>
+			<artifactId>slf4j-jdk14</artifactId>
+		</dependency>
+
+		<dependency>
+			<groupId>org.junit.jupiter</groupId>
+			<artifactId>junit-jupiter-api</artifactId>
+			<scope>test</scope>
+		</dependency>
+
+		<dependency>
+			<groupId>org.hamcrest</groupId>
+			<artifactId>hamcrest</artifactId>
+			<scope>test</scope>
+		</dependency>
+
+		<dependency>
+			<groupId>org.easymock</groupId>
+			<artifactId>easymock</artifactId>
+			<scope>test</scope>
+		</dependency>
+
+		<dependency>
+			<groupId>ca.bc.gov.nrs.vdyp</groupId>
+			<artifactId>vdyp-si32</artifactId>
+			<version>0.0.1-SNAPSHOT</version>
+		</dependency>
+	</dependencies>
+
+	<build>
+		<filters>
+			<filter>src/main/resources/application.properties</filter>
+		</filters>
+   		<resources>
+			<resource>
+				<directory>src/main/resources</directory>
+				<filtering>true</filtering>
+			</resource>
+		</resources>
+		<testResources>
+			<testResource>
+				<directory>src/test/resources</directory>
+				<filtering>true</filtering>
+			</testResource>
+		</testResources>
+		<pluginManagement>
+			<plugins>
+				<plugin>
+					<groupId>net.revelc.code.formatter</groupId>
+					<artifactId>formatter-maven-plugin</artifactId>
+					<dependencies>
+						<dependency>
+							<groupId>ca.bc.gov.nrs.vdyp</groupId>
+							<artifactId>vdyp-buildtools</artifactId>
+							<version>${project.version}</version>
+						</dependency>
+					</dependencies>
+				</plugin>
+			</plugins>
+		</pluginManagement>
+	</build>
+
+</project>

lib/vdyp-back/src/main/java/ca/bc/gov/nrs/vdyp/back/BackProcessingEngine.java

@@ -0,0 +1,121 @@
+package ca.bc.gov.nrs.vdyp.back;
+
+import static java.lang.Math.max;
+import static java.lang.Math.min;
+
+import java.util.EnumMap;
+import java.util.List;
+import java.util.Map;
+
+import ca.bc.gov.nrs.vdyp.application.ProcessingEngine;
+import ca.bc.gov.nrs.vdyp.application.ProcessingException;
+import ca.bc.gov.nrs.vdyp.application.StandProcessingException;
+import ca.bc.gov.nrs.vdyp.back.processing_state.BackProcessingState;
+import ca.bc.gov.nrs.vdyp.model.ComponentSizeLimits;
+import ca.bc.gov.nrs.vdyp.model.LayerType;
+import ca.bc.gov.nrs.vdyp.model.MatrixMap2;
+import ca.bc.gov.nrs.vdyp.model.MatrixMap2Impl;
+import ca.bc.gov.nrs.vdyp.model.Region;
+import ca.bc.gov.nrs.vdyp.model.UtilizationClass;
+import ca.bc.gov.nrs.vdyp.model.UtilizationClassVariable;
+import ca.bc.gov.nrs.vdyp.model.VolumeVariable;
+import ca.bc.gov.nrs.vdyp.processing_state.Bank;
+
+public class BackProcessingEngine extends ProcessingEngine {
+
+	/**
+	 *
+	 * @throws StandProcessingException
+	 */
+	// BACKPREP
+	void prepare(BackProcessingState state) throws ProcessingException {
+
+		// Copy the basal area for the veteran layer if it exists to the polygon state
+
+		state.setBaseAreaVeteran(
+				state.getVeteranLayerProcessingState().map(vetState -> vetState.getBank().basalAreas[0][0 + 1])
+		);
+
+		// Copy slices of the compatibility variables for the primary layer to the polygon state
+
+		var primaryState = state.getPrimaryLayerProcessingState();
+
+		int specCount = primaryState.getNSpecies();
+
+		@SuppressWarnings("unchecked")
+		MatrixMap2<UtilizationClass, VolumeVariable, Float>[] cvVolume = new MatrixMap2[specCount + 1];
+		@SuppressWarnings("unchecked")
+		Map<UtilizationClass, Float>[] cvBasalArea = new Map[specCount + 1];
+		@SuppressWarnings("unchecked")
+		Map<UtilizationClass, Float>[] cvQuadraticMeanDiameter = new Map[specCount + 1];
+		@SuppressWarnings("unchecked")
+		Map<UtilizationClassVariable, Float>[] cvPrimaryLayerSmall = new Map[specCount + 1];
+
+		for (int i = 0; i < primaryState.getNSpecies(); i++) {
+			final int specIndex = i + 1;
+			cvVolume[specIndex] = new MatrixMap2Impl<>(
+					List.of(UtilizationClass.values()), List.of(VolumeVariable.values()),
+					(uc, vv) -> primaryState.getCVVolume(specIndex, uc, vv, LayerType.PRIMARY)
+			);
+
+			cvBasalArea[specIndex] = new EnumMap<>(UtilizationClass.class);
+			cvQuadraticMeanDiameter[specIndex] = new EnumMap<>(UtilizationClass.class);
+			cvPrimaryLayerSmall[specIndex] = new EnumMap<>(UtilizationClassVariable.class);
+
+			for (var uc : UtilizationClass.values()) {
+				cvBasalArea[specIndex].put(uc, primaryState.getCVBasalArea(specIndex, uc, LayerType.PRIMARY));
+				cvQuadraticMeanDiameter[specIndex]
+						.put(uc, primaryState.getCVQuadraticMeanDiameter(specIndex, uc, LayerType.PRIMARY));
+			}
+
+			for (var ucv : UtilizationClassVariable.values()) {
+				cvPrimaryLayerSmall[specIndex].put(ucv, primaryState.getCVSmall(specIndex, ucv));
+			}
+
+		}
+
+		state.setCompatibilityVariableDetails(cvVolume, cvBasalArea, cvQuadraticMeanDiameter, cvPrimaryLayerSmall);
+
+		Bank primaryBank = state.getPrimaryLayerProcessingState().getBank();
+		Region polygonRegion = state.getCurrentBecZone().getRegion();
+
+		ComponentSizeLimits[] limits = new ComponentSizeLimits[primaryState.getNSpecies() + 1];
+		float[] finalDiameters = new float[primaryState.getNSpecies() + 1];
+
+		int ucIndexAll = UtilizationClass.ALL.ordinal(); // Intentionally use ordinal instead of index.
+
+		finalDiameters[0] = primaryBank.quadMeanDiameters[0][ucIndexAll];
+		for (int i = 0; i < primaryState.getNSpecies(); i++) {
+			final int specIndex = i + 1;
+
+			finalDiameters[specIndex] = primaryBank.quadMeanDiameters[specIndex][0];
+
+			final var originalLimits = state.getEstimators()
+					.getLimitsForHeightAndDiameter(primaryBank.speciesNames[specIndex], polygonRegion);
+
+			final float specQuadMeanDiameter = primaryBank.quadMeanDiameters[specIndex][ucIndexAll];
+			final float specLoreyHeight = primaryBank.loreyHeights[specIndex][ucIndexAll];
+
+			final float quadMeanDiameterLoreyHeightRatio = specQuadMeanDiameter / specLoreyHeight;
+
+			final float loreyHeightMaximum = max(originalLimits.loreyHeightMaximum(), specLoreyHeight);
+			final float quadMeanDiameterMaximum = max(originalLimits.quadMeanDiameterMaximum(), specQuadMeanDiameter);
+
+			final float minQuadMeanDiameterLoreyHeightRatio = min(
+					originalLimits.minQuadMeanDiameterLoreyHeightRatio(), quadMeanDiameterLoreyHeightRatio
+			);
+			final float maxQuadMeanDiameterLoreyHeightRatio = max(
+					originalLimits.maxQuadMeanDiameterLoreyHeightRatio(), quadMeanDiameterLoreyHeightRatio
+			);
+
+			limits[specIndex] = new ComponentSizeLimits(
+					loreyHeightMaximum, quadMeanDiameterMaximum, minQuadMeanDiameterLoreyHeightRatio,
+					maxQuadMeanDiameterLoreyHeightRatio
+			);
+
+		}
+		state.setLimits(limits);
+		state.setFinalQuadMeanDiameters(finalDiameters);
+
+	}
+}

lib/vdyp-back/src/main/java/ca/bc/gov/nrs/vdyp/back/BackProcessor.java

@@ -0,0 +1,32 @@
+package ca.bc.gov.nrs.vdyp.back;
+
+import java.util.Map;
+import java.util.Optional;
+import java.util.Set;
+import java.util.function.Predicate;
+
+import ca.bc.gov.nrs.vdyp.application.Pass;
+import ca.bc.gov.nrs.vdyp.application.ProcessingException;
+import ca.bc.gov.nrs.vdyp.application.Processor;
+import ca.bc.gov.nrs.vdyp.io.FileResolver;
+import ca.bc.gov.nrs.vdyp.io.parse.control.BaseControlParser;
+import ca.bc.gov.nrs.vdyp.model.VdypPolygon;
+
+public class BackProcessor extends Processor {
+
+	@Override
+	protected BaseControlParser getControlFileParser() {
+		// TODO Auto-generated method stub
+		return null;
+	}
+
+	@Override
+	public void process(
+			Set<Pass> vdypPassSet, Map<String, Object> controlMap, Optional<FileResolver> outputFileResolver,
+			Predicate<VdypPolygon> polygonFilter
+	) throws ProcessingException {
+		// TODO Auto-generated method stub
+
+	}
+
+}

lib/vdyp-back/src/main/java/ca/bc/gov/nrs/vdyp/back/VdypBackApplication.java

@@ -0,0 +1,39 @@
+package ca.bc.gov.nrs.vdyp.back;
+
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import ca.bc.gov.nrs.vdyp.application.VdypApplicationIdentifier;
+import ca.bc.gov.nrs.vdyp.application.VdypProcessingApplication;
+
+public class VdypBackApplication extends VdypProcessingApplication<BackProcessor> {
+
+	static {
+		initLogging(VdypBackApplication.class);
+	}
+
+	static final Logger logger = LoggerFactory.getLogger(VdypBackApplication.class);
+
+	public static final String DEFAULT_VDYP_CONTROL_FILE_NAME = "vdyp.ctr";
+
+	public static void main(final String... args) {
+
+		var app = new VdypBackApplication();
+		System.exit(app.run(args));
+	}
+
+	@Override
+	protected BackProcessor getProcessor() {
+		return null; // TODO
+	}
+
+	@Override
+	public String getDefaultControlFileName() {
+		return DEFAULT_VDYP_CONTROL_FILE_NAME;
+	}
+
+	@Override
+	public VdypApplicationIdentifier getId() {
+		return VdypApplicationIdentifier.VDYP_BACK;
+	}
+}

lib/vdyp-back/src/main/java/ca/bc/gov/nrs/vdyp/back/processing_state/BackLayerProcessingState.java

@@ -0,0 +1,43 @@
+package ca.bc.gov.nrs.vdyp.back.processing_state;
+
+import java.util.function.Predicate;
+
+import ca.bc.gov.nrs.vdyp.application.ProcessingException;
+import ca.bc.gov.nrs.vdyp.forward.controlmap.ForwardResolvedControlMap;
+import ca.bc.gov.nrs.vdyp.model.LayerType;
+import ca.bc.gov.nrs.vdyp.model.VdypLayer;
+import ca.bc.gov.nrs.vdyp.model.VdypPolygon;
+import ca.bc.gov.nrs.vdyp.model.VdypSpecies;
+import ca.bc.gov.nrs.vdyp.processing_state.LayerProcessingState;
+import ca.bc.gov.nrs.vdyp.processing_state.ProcessingState;
+
+public class BackLayerProcessingState
+		extends LayerProcessingState<ForwardResolvedControlMap, BackLayerProcessingState> {
+
+	protected BackLayerProcessingState(
+			ProcessingState<ForwardResolvedControlMap, BackLayerProcessingState> ps, VdypPolygon polygon,
+			LayerType subjectLayerType
+	) throws ProcessingException {
+		super(ps, polygon, subjectLayerType);
+		// TODO Auto-generated constructor stub
+	}
+
+	@Override
+	protected Predicate<VdypSpecies> getBankFilter() {
+		// TODO Auto-generated method stub
+		return x -> true;
+	}
+
+	@Override
+	protected void applyCompatibilityVariables(VdypSpecies species, int i) {
+		// TODO Auto-generated method stub
+
+	}
+
+	@Override
+	protected VdypLayer updateLayerFromBank() {
+		// TODO Auto-generated method stub
+		return null;
+	}
+
+}