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DESCRIPTION
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DESCRIPTION
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Package: epi.branch.sim
Title: Simulates an Epidemic Outbreak with a Branching Process
Version: 1.0.0
Authors@R:
c(person(given = "Henry",
family = "Ngo",
role = c("aut", "cre"),
email = "[email protected]"),
person(given = "Rebeca",
family = "Cardim Falcão",
role = "aut"),
person(given = "Michael",
family = "Otterstatter",
role = "aut"),
person(given = "Michael",
family = "Irvine",
role = "ctb"),
person(given = "Ioana",
family = "Sevcenco",
role = "ctb"),
person(given = "Caroline",
family = "Colijn",
role = "ctb"),
person(given = "Daniel",
family = "Coombs",
role = "ctb"),
person(given = "Province of British Columbia",
role = "cph"))
Description: Simulates an epidemic outbreak with a branching process from a number of
initial seed cases. Every simulated case has disease and intervention parameters
stochastically drawn from user-provided distributions. These parameters determine
which secondary cases occur, which in turn create the next generation of cases.
This simulation implements modelling of interventions such as manual/conventional
contact tracing, app-based contact tracing, quarantine, self-isolation, and
reduction of contacts through physical distancing. This simulation also includes
the option of adding new cases via importation, which may have different
intervention policies. The simulation itself outputs a dataframe that summarizes
every case generated during the course of the simulation. This can be used to
generate metrics or other statistics across a large number of runs. Some example
driver functions to do this are provided.
Suggests:
sn,
knitr,
rmarkdown
License: Apache License (== 2.0) | file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.0
VignetteBuilder: knitr