MPAthic is a software package for analyzing data from a variety massively parallel assays, including Sort-Seq assays, Massively Parallel Reporter assays, and Deep Mutational Scanning assays. MPAthic is a python API.
MPAthic can be installed from PyPI by executing
pip install mpathic
- Documentation: http://mpathic.readthedocs.io/en/latest/
- Github: https://github.com/atareen/mpathic
MPAthic is currently written in Python 2.7.10. It will be updated to python 3 soon. Installation currently requires a number of other Python packages:
- Babel==2.5.3
- backports.functools-lru-cache==1.5
- biopython==1.71
- certifi==2018.4.16
- chardet==3.0.4
- cvxopt==1.1.9
- cycler==0.10.0
- Cython==0.28.1
- docutils==0.14
- idna==2.6
- imagesize==1.0.0
- kiwisolver==1.0.1
- MarkupSafe==1.0
- matplotlib==2.2.2
- mpmath==1.0.0
- numpy==1.14.2
- packaging==17.1
- pandas==0.22.0
- Pygments==2.2.0
- pymc==2.3.6
- pyparsing==2.2.0
- python-dateutil==2.7.2
- pytz==2018.4
- requests==2.18.4
- scikit-learn==0.19.1
- scipy==1.0.1
- six==1.11.0
- sklearn==0.0
- snowballstemmer==1.2.1
- subprocess32==3.2.7
- typing==3.6.4
- urllib3==1.22
- weblogo==3.6.0