From 75e10c80e626145c781a52629bed1d9527f372b8 Mon Sep 17 00:00:00 2001 From: Carmen Saenz Ausejo Date: Wed, 20 Apr 2022 10:08:32 +0200 Subject: [PATCH] MIntO README --- README_v2.md | 34 ---------------------------------- 1 file changed, 34 deletions(-) delete mode 100644 README_v2.md diff --git a/README_v2.md b/README_v2.md deleted file mode 100644 index 759fbc6..0000000 --- a/README_v2.md +++ /dev/null @@ -1,34 +0,0 @@ -

MIntO

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A Modular and Scalable Pipeline for Microbiome Metagenomics and Metatranscriptomics Data Integration

- -MIntO (Microbiome Integrated Meta-Omics), is a **highly versatile pipeline** that integrates metagenomic and metatranscriptomic data in a scalable way. -The distinctive feature of this pipeline is the computation of gene expression profile by taking into account the community turnover and gene expression variations as the underlying process that shapes the community transcript levels along the time and between conditions. -The integrated pipeline will be relevant to provide unique biochemical insights into the microbial ecology by linking functions to retrieved genomes and to examine gene expression variations. - -MIntO can be downloaded here: https://github.com/arumugamlab/MIntO - -

- - -## What should I know about MIntO? -There is a lot of code behind MIntO (it really does a lot of stuff!), but do not be scared about it... everyone can use it! -We provide all the key steps and necessary explanations in the wiki section. -We suggest to read the **[MIntO in a nutshell](https://github.com/arumugamlab/MIntO/wiki)** section first, just to have an idea on how MIntO works. -Then move to the **[Installation&Dependencies](https://github.com/arumugamlab/MIntO/wiki)** and then you are set to discover each step! - -Also you can have a look to the **tutorial** [here](https://github.com/arumugamlab/MIntO/wiki)! :) - - -## Publication - -At the moment, please cite MIntO if you use it during your analysis by linking to this github page. - -Carmen Saenz, Eleonora Nigro, Vithiagaran Gunalan, Manimozhiyan Arumugam* - -Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark - -*Correspondence: arumugam@sund.ku.dk - - -## Contacts -Feel free to get in touch with the authors for any question! :)