Changing Minimum Sequencing Depth Parameter in artic-ncov2019

[laura-bankers]

Has there been any movement towards making min depth a configurable parameter to artic minion --medaka? Given all of the recent conversations in the public health community about the effects of minimum coverage depth for variant and consensus calling for SAR-CoV-2, it would be great if there was a more user friendly way to test how changes to workflow parameters (min depth in particular) influences our QC metrics and outputs from artic.

[leocaserta]

I wouls also be interested in customize this parameter if possible