From e8a062aea2b60cc779247a07460fd3326deab871 Mon Sep 17 00:00:00 2001 From: Stef van Buuren Date: Wed, 17 Apr 2024 18:20:40 +0200 Subject: [PATCH] Update documentation tags to roxygen2 7.3.1 requirements --- R/convergence.R | 1 + R/df.residual.R | 5 ++++- R/edit.setup.R | 2 +- R/formula.R | 4 ++-- R/mice-package.R | 4 ++-- R/mice.R | 4 ++-- R/mipo.R | 1 + R/predictorMatrix.R | 2 +- man/mice.Rd | 30 ++++++++++++++++++++++++++ man/mice.impute.cart.Rd | 4 ++-- man/mice.impute.lasso.logreg.Rd | 4 ++-- man/mice.impute.lasso.norm.Rd | 4 ++-- man/mice.impute.lasso.select.logreg.Rd | 4 ++-- man/mice.impute.lasso.select.norm.Rd | 4 ++-- man/mice.impute.lda.Rd | 4 ++-- man/mice.impute.logreg.Rd | 2 +- man/mice.impute.logreg.boot.Rd | 2 +- man/mice.impute.mean.Rd | 4 ++-- man/mice.impute.midastouch.Rd | 4 ++-- man/mice.impute.mnar.Rd | 4 ++-- man/mice.impute.mpmm.Rd | 4 ++-- man/mice.impute.norm.Rd | 2 +- man/mice.impute.norm.boot.Rd | 4 ++-- man/mice.impute.norm.nob.Rd | 4 ++-- man/mice.impute.norm.predict.Rd | 4 ++-- man/mice.impute.pmm.Rd | 4 ++-- man/mice.impute.polr.Rd | 4 ++-- man/mice.impute.polyreg.Rd | 4 ++-- man/mice.impute.quadratic.Rd | 4 ++-- man/mice.impute.rf.Rd | 4 ++-- man/mice.impute.ri.Rd | 4 ++-- 31 files changed, 85 insertions(+), 50 deletions(-) diff --git a/R/convergence.R b/R/convergence.R index 922cc51f5..cee7c755e 100644 --- a/R/convergence.R +++ b/R/convergence.R @@ -120,4 +120,5 @@ convergence <- function(data, diagnostic = "all", parameter = "mean", ...) { } # function to extend is.nan() to data.frame objects +#' @export is.nan.data.frame <- function(x) do.call(cbind, lapply(x, is.nan)) diff --git a/R/df.residual.R b/R/df.residual.R index bfdbc1cc8..b10c0947b 100644 --- a/R/df.residual.R +++ b/R/df.residual.R @@ -1,19 +1,22 @@ +#' @export df.residual.mira <- function(object, ...) { fit <- object$analyses[[1]] df.residual(fit) } +#' @export df.residual.lme <- function(object, ...) { object$fixDF[["X"]][1] } +#' @export df.residual.mer <- function(object, ...) { sum(object@dims[2:4] * c(1, -1, -1)) + 1 } - +#' @export df.residual.multinom <- function(object, ...) { nrow(object$residuals) - object$edf } diff --git a/R/edit.setup.R b/R/edit.setup.R index 7bd7dc966..f63999563 100644 --- a/R/edit.setup.R +++ b/R/edit.setup.R @@ -1,4 +1,4 @@ -edit.setup <- function(data, setup, +mice.edit.setup <- function(data, setup, allow.na = FALSE, remove.constant = TRUE, remove.collinear = TRUE, diff --git a/R/formula.R b/R/formula.R index c9a3facd9..9ad53d843 100644 --- a/R/formula.R +++ b/R/formula.R @@ -127,7 +127,7 @@ name.formulas <- function(formulas, prefix = "F") { check.formulas <- function(formulas, data) { formulas <- name.formulas(formulas) formulas <- handle.oldstyle.formulas(formulas, data) - formulas <- lapply(formulas, expand.dots, data) + formulas <- lapply(formulas, mice.expand.dots, data) # escape if formula is list of two formula's if (any(sapply(formulas, is.list))) { return(formulas) @@ -238,7 +238,7 @@ hasdot <- function(f) { } } -expand.dots <- function(formula, data) { +mice.expand.dots <- function(formula, data) { if (!is.formula(formula)) { return(formula) } diff --git a/R/mice-package.R b/R/mice-package.R index 42f97159b..42a6774c2 100644 --- a/R/mice-package.R +++ b/R/mice-package.R @@ -69,7 +69,6 @@ #' depend on the operating system. See the discussion in the #' "R Installation and Administration" guide for further information. #' -#' @docType package #' @aliases mice-package #' #' @name mice @@ -92,4 +91,5 @@ #' \href{https://stefvanbuuren.name/fimd/}{\emph{Flexible Imputation of Missing Data. Second Edition.}} #' Chapman & Hall/CRC. Boca Raton, FL. #' @useDynLib mice, .registration = TRUE -NULL +#' @keywords internal +"_PACKAGE" diff --git a/R/mice.R b/R/mice.R index 8bc2d0f02..9cf086630 100644 --- a/R/mice.R +++ b/R/mice.R @@ -411,7 +411,7 @@ mice <- function(data, visitSequence <- check.visitSequence(visitSequence, data = data, where = where, blocks = blocks ) - predictorMatrix <- edit.predictorMatrix( + predictorMatrix <- mice.edit.predictorMatrix( predictorMatrix = predictorMatrix, visitSequence = visitSequence, user.visitSequence = user.visitSequence, @@ -436,7 +436,7 @@ mice <- function(data, visitSequence = visitSequence, post = post ) - setup <- edit.setup(data, setup, ...) + setup <- mice.edit.setup(data, setup, ...) method <- setup$method predictorMatrix <- setup$predictorMatrix visitSequence <- setup$visitSequence diff --git a/R/mipo.R b/R/mipo.R index 975865048..545857d57 100644 --- a/R/mipo.R +++ b/R/mipo.R @@ -151,6 +151,7 @@ process_mipo <- function(z, x, conf.int = FALSE, conf.level = .95, z } +#' @export vcov.mipo <- function(object, ...) { so <- diag(object$t) dimnames(so) <- list(object$term, object$term) diff --git a/R/predictorMatrix.R b/R/predictorMatrix.R index 4d1399358..1ff6f0e3d 100644 --- a/R/predictorMatrix.R +++ b/R/predictorMatrix.R @@ -135,7 +135,7 @@ check.predictorMatrix <- function(predictorMatrix, ) } -edit.predictorMatrix <- function(predictorMatrix, +mice.edit.predictorMatrix <- function(predictorMatrix, visitSequence, user.visitSequence, maxit) { diff --git a/man/mice.Rd b/man/mice.Rd index 9527966a5..a5d1af5b1 100644 --- a/man/mice.Rd +++ b/man/mice.Rd @@ -447,10 +447,40 @@ data sets.} Dissertation. Rotterdam: Erasmus University. \code{\link{set.seed}}, \code{\link{complete}} } \author{ +\strong{Maintainer}: Stef van Buuren \email{stef.vanbuuren@tno.nl} + +Authors: +\itemize{ + \item Karin Groothuis-Oudshoorn \email{c.g.m.oudshoorn@utwente.nl} +} + +Other contributors: +\itemize{ + \item Gerko Vink \email{g.vink@uu.nl} [contributor] + \item Rianne Schouten \email{R.M.Schouten@uu.nl} [contributor] + \item Alexander Robitzsch \email{robitzsch@ipn.uni-kiel.de} [contributor] + \item Patrick Rockenschaub \email{rockenschaub.patrick@gmail.com} [contributor] + \item Lisa Doove \email{lisa.doove@ppw.kuleuven.be} [contributor] + \item Shahab Jolani \email{s.jolani@maastrichtuniversity.nl} [contributor] + \item Margarita Moreno-Betancur \email{margarita.moreno@mcri.edu.au} [contributor] + \item Ian White \email{ian.white@ucl.ac.uk} [contributor] + \item Philipp Gaffert \email{philipp.gaffert@gfk.com} [contributor] + \item Florian Meinfelder \email{florian.meinfelder@uni-bamberg.de} [contributor] + \item Bernie Gray \email{bfgray3@gmail.com} [contributor] + \item Vincent Arel-Bundock \email{vincent.arel-bundock@umontreal.ca} [contributor] + \item Mingyang Cai \email{m.cai@uu.nl} [contributor] + \item Thom Volker \email{t.b.volker@uu.nl} [contributor] + \item Edoardo Costantini \email{e.costantini@tilburguniversity.edu} [contributor] + \item Caspar van Lissa \email{c.j.vanlissa@uu.nl} [contributor] + \item Hanne Oberman \email{h.i.oberman@uu.nl} [contributor] +} + + Stef van Buuren \email{stef.vanbuuren@tno.nl}, Karin Groothuis-Oudshoorn \email{c.g.m.oudshoorn@utwente.nl}, 2000-2010, with contributions of Alexander Robitzsch, Gerko Vink, Shahab Jolani, Roel de Jong, Jason Turner, Lisa Doove, John Fox, Frank E. Harrell, and Peter Malewski. } +\keyword{internal} \keyword{iteration} diff --git a/man/mice.impute.cart.Rd b/man/mice.impute.cart.Rd index 3accdc7c5..7ed8bce7c 100644 --- a/man/mice.impute.cart.Rd +++ b/man/mice.impute.cart.Rd @@ -76,16 +76,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.lasso.logreg.Rd b/man/mice.impute.lasso.logreg.Rd index a1e3a89a2..d102536d9 100644 --- a/man/mice.impute.lasso.logreg.Rd +++ b/man/mice.impute.lasso.logreg.Rd @@ -67,16 +67,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.lasso.norm.Rd b/man/mice.impute.lasso.norm.Rd index 7afa0a49c..6e6fb86e2 100644 --- a/man/mice.impute.lasso.norm.Rd +++ b/man/mice.impute.lasso.norm.Rd @@ -67,16 +67,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.lasso.select.logreg.Rd b/man/mice.impute.lasso.select.logreg.Rd index beb7ec882..027e2a513 100644 --- a/man/mice.impute.lasso.select.logreg.Rd +++ b/man/mice.impute.lasso.select.logreg.Rd @@ -75,16 +75,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.norm}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.lasso.select.norm.Rd b/man/mice.impute.lasso.select.norm.Rd index 3597d3985..e825a028c 100644 --- a/man/mice.impute.lasso.select.norm.Rd +++ b/man/mice.impute.lasso.select.norm.Rd @@ -77,16 +77,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.norm}()}, \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.lda.Rd b/man/mice.impute.lda.Rd index 316c12687..833b6b699 100644 --- a/man/mice.impute.lda.Rd +++ b/man/mice.impute.lda.Rd @@ -75,16 +75,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.norm}()}, \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.logreg.Rd b/man/mice.impute.logreg.Rd index a64851401..8427031d2 100644 --- a/man/mice.impute.logreg.Rd +++ b/man/mice.impute.logreg.Rd @@ -77,10 +77,10 @@ Other univariate imputation functions: \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.logreg.boot.Rd b/man/mice.impute.logreg.boot.Rd index 3fc94bedd..2076dc202 100644 --- a/man/mice.impute.logreg.boot.Rd +++ b/man/mice.impute.logreg.boot.Rd @@ -57,10 +57,10 @@ Other univariate imputation functions: \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.mean.Rd b/man/mice.impute.mean.Rd index 66a8bf45e..3c3435bc4 100644 --- a/man/mice.impute.mean.Rd +++ b/man/mice.impute.mean.Rd @@ -58,15 +58,15 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.midastouch.Rd b/man/mice.impute.midastouch.Rd index a8956bb93..29687eb3f 100644 --- a/man/mice.impute.midastouch.Rd +++ b/man/mice.impute.midastouch.Rd @@ -133,15 +133,15 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.mnar.Rd b/man/mice.impute.mnar.Rd index 0d23b2701..3568786ae 100644 --- a/man/mice.impute.mnar.Rd +++ b/man/mice.impute.mnar.Rd @@ -179,15 +179,15 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.mpmm.Rd b/man/mice.impute.mpmm.Rd index 2f72b8afd..4d82409bd 100644 --- a/man/mice.impute.mpmm.Rd +++ b/man/mice.impute.mpmm.Rd @@ -71,15 +71,15 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.norm.Rd b/man/mice.impute.norm.Rd index a39ee2d60..a082d1ffc 100644 --- a/man/mice.impute.norm.Rd +++ b/man/mice.impute.norm.Rd @@ -64,8 +64,8 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, diff --git a/man/mice.impute.norm.boot.Rd b/man/mice.impute.norm.boot.Rd index 8210148eb..b426a7139 100644 --- a/man/mice.impute.norm.boot.Rd +++ b/man/mice.impute.norm.boot.Rd @@ -48,15 +48,15 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.norm.nob.Rd b/man/mice.impute.norm.nob.Rd index 480ca3d9d..683170dc9 100644 --- a/man/mice.impute.norm.nob.Rd +++ b/man/mice.impute.norm.nob.Rd @@ -70,15 +70,15 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.norm.predict.Rd b/man/mice.impute.norm.predict.Rd index 21c322077..86b2f7ecb 100644 --- a/man/mice.impute.norm.predict.Rd +++ b/man/mice.impute.norm.predict.Rd @@ -67,15 +67,15 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.pmm.Rd b/man/mice.impute.pmm.Rd index 5e1e06968..87b0d6428 100644 --- a/man/mice.impute.pmm.Rd +++ b/man/mice.impute.pmm.Rd @@ -191,16 +191,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, \code{\link{mice.impute.quadratic}()}, diff --git a/man/mice.impute.polr.Rd b/man/mice.impute.polr.Rd index 3d3870d40..21f17912b 100644 --- a/man/mice.impute.polr.Rd +++ b/man/mice.impute.polr.Rd @@ -105,16 +105,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polyreg}()}, \code{\link{mice.impute.quadratic}()}, diff --git a/man/mice.impute.polyreg.Rd b/man/mice.impute.polyreg.Rd index eaf10be34..30cf4f435 100644 --- a/man/mice.impute.polyreg.Rd +++ b/man/mice.impute.polyreg.Rd @@ -92,16 +92,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.quadratic}()}, diff --git a/man/mice.impute.quadratic.Rd b/man/mice.impute.quadratic.Rd index fa68940a5..b8e7d441b 100644 --- a/man/mice.impute.quadratic.Rd +++ b/man/mice.impute.quadratic.Rd @@ -107,16 +107,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.rf.Rd b/man/mice.impute.rf.Rd index 47a28ea5a..f147a3b6f 100644 --- a/man/mice.impute.rf.Rd +++ b/man/mice.impute.rf.Rd @@ -95,16 +95,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()}, diff --git a/man/mice.impute.ri.Rd b/man/mice.impute.ri.Rd index ab2e0937b..8a5b6ccf8 100644 --- a/man/mice.impute.ri.Rd +++ b/man/mice.impute.ri.Rd @@ -55,16 +55,16 @@ Other univariate imputation functions: \code{\link{mice.impute.lasso.select.logreg}()}, \code{\link{mice.impute.lasso.select.norm}()}, \code{\link{mice.impute.lda}()}, -\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.logreg}()}, +\code{\link{mice.impute.logreg.boot}()}, \code{\link{mice.impute.mean}()}, \code{\link{mice.impute.midastouch}()}, \code{\link{mice.impute.mnar.logreg}()}, \code{\link{mice.impute.mpmm}()}, +\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.norm.boot}()}, \code{\link{mice.impute.norm.nob}()}, \code{\link{mice.impute.norm.predict}()}, -\code{\link{mice.impute.norm}()}, \code{\link{mice.impute.pmm}()}, \code{\link{mice.impute.polr}()}, \code{\link{mice.impute.polyreg}()},