-
Notifications
You must be signed in to change notification settings - Fork 0
/
config.yml
34 lines (28 loc) · 1.26 KB
/
config.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
# -------------------------------------------------------------
# User settings for data files and gene label
# -------------------------------------------------------------
# -------------------------------------------------------------
# Mammalian REM2
# -------------------------------------------------------------
Nucleotide: data/mammalian_REM2/Rem2_refseq_transcript.fasta
Protein: data/mammalian_REM2/Rem2_refseq_protein.fasta
HumanRef: data/mammalian_REM2/Rem2_Human.fasta
CSV: data/mammalian_REM2/Rem2_orthologs.csv
Label: mammalian_REM2
TN93_Threshold: 0.1
# User settings for NCBI Entrez
EMAIL: "[email protected]"
# -------------------------------------------------------------
# Do not change below this line
# -------------------------------------------------------------
PREMSA: hyphy-analyses/codon-msa/pre-msa.bf
POSTMSA: hyphy-analyses/codon-msa/post-msa.bf
FMM: hyphy-analyses/FitMultiModel/FitMultiModel.bf
BUSTEDSMH: hyphy-analyses/BUSTED-MH/BUSTED-MH.bf
FITMG94: hyphy-analyses/FitMG94/FitMG94.bf
HYPHY: /home/aglucaci/anaconda3/envs/AOC_REM2/bin/hyphy
HYPHYMPI: HYPHYMPI
STRIKEAMBIGS: scripts/strike-ambigs.bf
# -------------------------------------------------------------
# End of file
# -------------------------------------------------------------