From be0b129b6c5624f6bcb1ec385f9b72ac271e7329 Mon Sep 17 00:00:00 2001 From: Amine Ghozlane Date: Wed, 27 Jul 2016 17:56:46 +0200 Subject: [PATCH] Reverse Max/min --- README.md | 4 ++-- masque.sh | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 7a37cf5..36446b3 100755 --- a/README.md +++ b/README.md @@ -83,8 +83,8 @@ Then, install the databases as follow : --minphred Qvalue must lie between [0-40] (Default minimum qvalue 20) --minphredperc Minimum allowed percentage of correctly called nucleotides [0-100] (Default 80) --NbMismatchMapping Maximum number of mismatch when mapping end-to-end against Human genome and Phi174 genome (Default 1 mismatch is accepted) ---maxoverlap Minimum overlap when paired reads are considered (Default 200 nt) ---minoverlap Maximum overlap when paired reads are considered (Default 50 nt) +--maxoverlap Maximum overlap when paired reads are considered (Default 200 nt) +--minoverlap Minimum overlap when paired reads are considered (Default 50 nt) --minampliconlength Minimum amplicon length (Default 64nt) --minotusize Indicate minimum OTU size (Default 4) --prefixdrep Perform prefix dereplication (Default full length dereplication) diff --git a/masque.sh b/masque.sh index 57d940c..ea689fe 100755 --- a/masque.sh +++ b/masque.sh @@ -109,8 +109,8 @@ display_help() { --minphred\tQvalue must lie between [0-40] (Default minimum qvalue 20) --minphredperc\tMinimum allowed percentage of correctly called nucleotides [0-100] (Default 80) --NbMismatchMapping\tMaximum number of mismatch when mapping end-to-end against Human genome and Phi174 genome (Default 1 mismatch is accepted) ---maxoverlap\tMinimum overlap when paired reads are considered (Default 200 nt) ---minoverlap\tMaximum overlap when paired reads are considered (Default 50 nt) +--maxoverlap\tMaximum overlap when paired reads are considered (Default 200 nt) +--minoverlap\tMini overlap when paired reads are considered (Default 50 nt) --minampliconlength\tMinimum amplicon length (Default 64nt) --minotusize\tIndicate minimum OTU size (Default 4) --prefixdrep\tPerform prefix dereplication (Default full length dereplication)