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Range query API #55

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6 of 29 tasks
GarrettNg opened this issue Nov 22, 2023 · 0 comments
Open
6 of 29 tasks

Range query API #55

GarrettNg opened this issue Nov 22, 2023 · 0 comments

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@GarrettNg
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GarrettNg commented Nov 22, 2023 •
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Partially implemented (some may already be implemented)

  • alignments:
    • sam.gz:
      • tbi
      • csi
    • bam: bai/csi
      • bai
      • tbi
      • csi
    • cram
      • tbi
      • csi
  • variants:
    • vcf
      • tbi
      • csi
    • bcf
      • tbi
      • csi
  • sequences: fasta, fastq
    • fasta.gz
      • fai (fasta, uncompressed)
      • [] gzi (compressed)
    • fastq.gz
      • fai (fastq, uncompressed)
      • gzi (compressed)
  • interval feature
    • bed.gz
    • bedGraph.gz
    • gtf.gz/gff.gz
    • Arbitrary TSV files with tabix
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@GarrettNg