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error in the tutorial #368

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xiaopuren opened this issue Feb 14, 2024 · 1 comment
Open

error in the tutorial #368

xiaopuren opened this issue Feb 14, 2024 · 1 comment

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@xiaopuren
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Describe the bug
For the Graphein - Atom Graph Tutorial (https://graphein.ai/notebooks/atom_graph_tutorial.html)
Error is in this line: g = construct_graph(config=config, pdb_path="../examples/pdbs/3eiy.pdb")
pdb_path should be changed to path

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  • Graphein Version [e.g. 22] & how it was installed

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@zjlab-BioGene
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Change the parameter as "path" instead of "pdb_path" will work in version 1.7.5/1.7.6.

a-r-j added a commit that referenced this issue Mar 31, 2024
a-r-j added a commit that referenced this issue Mar 31, 2024
* Add PyG install to tutorial notebook #338

* Fix `path` arg in tutorial #368
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