.travis.yml

# Modified from https://github.com/biocore/scikit-bio/
language: python
python:
  - "2.7"
env:
  - NUMPY_VERSION=1.7
  - NUMPY_VERSION=1.8
  - NUMPY_VERSION=1.8 USE_H5PY=True
  - NUMPY_VERSION=1.8 USE_CYTHON=True
  - NUMPY_VERSION=1.7 USE_H5PY=True
before_install:
  - wget http://repo.continuum.io/miniconda/Miniconda-2.2.2-Linux-x86_64.sh -O miniconda.sh
  - chmod +x miniconda.sh
  - ./miniconda.sh -b
  - export PATH=/home/travis/anaconda/bin:$PATH
  # Update conda itself
  - conda update --yes conda
install:
  - conda create --yes -n env_name python=$TRAVIS_PYTHON_VERSION pip numpy=$NUMPY_VERSION scipy nose pep8 Sphinx coverage
  - if [ ${USE_CYTHON} ]; then conda install --yes -n env_name cython; fi
  - if [ ${USE_H5PY} ]; then conda install --yes -n env_name h5py>=2.2.0; fi
  - source activate env_name
  - pip install coveralls pyqi
  - pip install -e . --no-deps
script:
  - nosetests --with-doctest --with-coverage
  - pep8 biom setup.py
  - biom show-install-info
  - make -C doc html
  # we can only validate the tables if we have H5PY
  - if [ ${USE_H5PY} ]; then for table in examples/*hdf5.biom; do echo ${table}; biom validate-table -i ${table}; done; fi
  # validate JSON formatted tables
  - for table in examples/*table.biom; do echo ${table}; biom validate-table -i ${table} --is-json; done;
after_success:
  - coveralls