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Darts_BHT rmats_count with stat on #16

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hj256 opened this issue Feb 9, 2020 · 1 comment

hj256 commented Feb 9, 2020

Dear zj-zhang,

Thank you for developing DARTS! I have two questions.

Is it possible to run "Darts_BHT rmats_count" with the stat part on, as described in README?
Will it be possible to run "Darts_BHT bayes_infer" with "-t MXE"?
Thank you!

Best wishes,
hj256

Collaborator

zj-zhang commented Feb 10, 2020

Darts_BHT by default should run the rMATS stats part and return the uncorrected P-values. Furthermore, If you would like to run statistics part for rMATS, please see this repository for details: https://github.com/Xinglab/rMATS-STAT . It can be called to run directly on the counting results generated by Darts_BHT rmats_count.
Currently MXE is not supported/tested in the Darts model.

Hope this helps.

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