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About the compatiblity of Dorado basecalling model #28

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gxAlan233 opened this issue Aug 5, 2024 · 1 comment
Open

About the compatiblity of Dorado basecalling model #28

gxAlan233 opened this issue Aug 5, 2024 · 1 comment

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@gxAlan233
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gxAlan233 commented Aug 5, 2024

I have a bam file which was basecalled by Dorado, and I try to run deepmod2 on it using the latest model bilstm_r10.4.1_5khz_v4.3. However the Dorado basecalling used for that bam file is v5.0 rather than v4.3.
Is it still OK when the Dorado basecalling version is higer than deepmod2's model? Or do I have to basecall it again using v4.3.0 Dorado basecalling?

@gxAlan233 gxAlan233 changed the title About the compatiblity of Dorado basecalling module About the compatiblity of Dorado basecalling model Aug 5, 2024
@umahsn
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umahsn commented Aug 5, 2024

Hi, we are training new models for v5 of Dorado. We will have the models uploaded here after we test in a few days.

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