phpunit.yml

name: Run PHPUnit Tests

# Controls when the workflow will run.
# Run this workflow every time a new commit is pushed to your repository
on: [push, pull_request]

jobs:
  # This key is the name of the job.
  run-tests:
    # The type of system that the job will run on.
    runs-on: ubuntu-latest
    # Matrix Build for this job.
    strategy:
      matrix:
        php-versions: ['7.4.0']
    # Name the matrix build so we can tell them apart.
    name: PHP Unit Testing of Helium Exporter Module (PHP ${{ matrix.php-versions }})

    # Service containers to run with `run-tests`
    services:
      # Label used to access the service container
      postgres:
        # Docker Hub image
        image: postgres:9.3
        env:
          POSTGRES_USER: tripaladmin
          POSTGRES_PASSWORD: somesupersecurepassword
          POSTGRES_DB: testdb
        # Set health checks to wait until postgres has started
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5
        ports:
          # Maps tcp port 5432 on service container to the host
          - 5432:5432

    steps:
    # 1) Checkout the repository and setup workspace.
    - uses: actions/checkout@v2

    # 2) Setup PHP according to the version passed in.
    - name: Setup PHP
      uses: shivammathur/setup-php@v2
      with:
        php-version: ${{ matrix.php-versions }}
        extensions: mbstring, intl, php-pgsql, php-gd, php-xml
        ini-values: memory_limit=2G
        coverage: xdebug
        tools: composer, phpunit

    # 3) Install Drush/Drupal/Tripal
    - name: Setup Drush, Drupal 7.x, Tripal 3.x
      id: tripalsetup
      uses: tripal/setup-tripal-action@7.x-3.x-1.0
      with:
        postgres_user: tripaladmin
        postgres_pass: somesupersecurepassword
        postgres_db: testdb

    
    # LIBRARIES:

    # 4-a) Install Spreadsheet Reader Libraries
    - name: Install Spreadsheet Reader Libraries
      id: installspreadsheetreader
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: |
        cd $DRUPAL_ROOT/sites/all/libraries
        git clone https://github.com/nuovo/spreadsheet-reader
   
    # 4-b) Install XLS Writter Libraries
    - name: Install XLS Writer Libraries
      id: installxlswriter
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: |
        cd $DRUPAL_ROOT/sites/all/libraries
        git clone https://github.com/SystemDevil/PHP_XLSXWriter_plus
    # 4-c) Install D3 Libraries
    - name: Install D3 Libraries
      id: installd3
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: |
        cd $DRUPAL_ROOT/sites/all/libraries
        wget https://github.com/d3/d3/releases/download/v3.5.14/d3.zip && unzip d3.zip
        mkdir d3 && mv d3.js d3/ && mv d3.min.js d3/
    
    # DEPENDENCIES:

    # 5-a) Install Libraries Dependencies
    - name: Install Libraries Dependencies
      id: installlibraries
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: |
        cd $DRUPAL_ROOT
        $DRUSH en libraries -y
    # 5-b) Install Drag and Drop Upload Dependencies
    - name: Install Drag and Drop Upload Dependencies
      id: installdraganddropupload
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: |
        cd $DRUPAL_ROOT/sites/all/modules
        drush pm-download dragndrop_upload
        $DRUSH en dragndrop_upload dragndrop_upload_element -y
    # 6) Install Raw Phenotypes.
    - name: Install Raw Phenotypes
      id: installrawphenotypes
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: |
        cd $DRUPAL_ROOT/sites/all/modules
        git clone https://github.com/UofS-Pulse-Binfo/rawphenotypes.git
        cd $DRUPAL_ROOT/sites/all/libraries/spreadsheet-reader
        git apply $DRUPAL_ROOT/sites/all/modules/rawphenotypes/spreadsheet-reader.patch
    # 6-a) Enable Raw Phenotypes
    - name: Enable Raw Phenotypes
      id: enablerawphenotypes
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: | 
        cd $DRUPAL_ROOT
        $DRUSH en -y rawpheno
    # 7) Install Tripal Download API    
    - name: Install Tripal Download API Dependencies
      id: installtripaldownloadapi
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: |
        cd $DRUPAL_ROOT/sites/all/modules
        git clone https://github.com/tripal/trpdownload_api.git
        cd $DRUPAL_ROOT
        $DRUSH en -y trpdownload_api    
    # 8) Install Helium Exporter
    - name: Install Helium Exporter
      id: installheliumexporter
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: |
        mkdir -p $DRUPAL_ROOT/sites/all/modules/helium_exporter
        cp -R * $DRUPAL_ROOT/sites/all/modules/helium_exporter
        cd $DRUPAL_ROOT
        $DRUSH en -y helium_exporter
    # 9) Runs the PHPUnit tests.    
    - name: PHPUnit Tests
      env:
        DRUSH: ${{ steps.tripalsetup.outputs.drush_path }}
        DRUPAL_ROOT: ${{ steps.tripalsetup.outputs.drupal_root }}
      run: |
        cd $DRUPAL_ROOT/sites/all/modules/helium_exporter
        composer require --dev mheap/phpunit-github-actions-printer
        composer update --quiet
        ./vendor/bin/phpunit