Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Spike out counting algorithm #5

Open
glesica opened this issue Apr 7, 2020 · 0 comments
Open

Spike out counting algorithm #5

glesica opened this issue Apr 7, 2020 · 0 comments
Assignees
@sarahsummerfield
Labels
enhancement New feature or request

Comments

@glesica
Copy link
Contributor

glesica commented Apr 7, 2020 •
edited
Loading

Python implementation of the counting algorithm using a dictionary (hash map) that does exactly one thing:

Given several 32-mers and a sequence, returns the count of how many times each 32-mer was found in the sequence.

def do_count(mers, seq):
  pass
@glesica glesica added the enhancement New feature or request label Apr 7, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@sarahsummerfield sarahsummerfield

Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@glesica @sarahsummerfield