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RATT does not transfer mRNA features if they include < or > in their positions.
This can be fixed by applying the following changes:
main.ratt.pl
739a740
$ar[$i] =~ /(\d+)\.\.\>(\d+)/;
ratt_correction.pm
2122a2123,2157
elsif (/^(-\d+)..>(-\d+)$/) {
$a1=$1;
$b1=$2;
if ($a1<1) {
if ($b1<10) {
$a1=$newPos;
}
else {
$a1=($b1-9)
}
$newPos+=$newPos
}
if ($b1>$seqLength) {
$b1=$seqLength;
}
if ($a1>$seqLength) {
$a1=($b1-3)
}
if ($b1<1) {
$b1=($a1+9);
$newPos+=$newPos
}
if ($a1>$b1) {
$tmp{$b1}="$b1..$a1"
}
else {
$tmp{$a1}="$a1..$b1"
}
}
The text was updated successfully, but these errors were encountered:
RATT does not transfer mRNA features if they include < or > in their positions.
This can be fixed by applying the following changes:
main.ratt.pl
739a740
ratt_correction.pm
2122a2123,2157
The text was updated successfully, but these errors were encountered: