From d26c4e0164c79400d87a669b0f30b9dd57874250 Mon Sep 17 00:00:00 2001 From: Mike Lloyd Date: Thu, 18 Jul 2024 15:25:26 -0400 Subject: [PATCH] version bump --- ReleaseNotes.md | 4 ++++ nextflow.config | 4 ++-- 2 files changed, 6 insertions(+), 2 deletions(-) diff --git a/ReleaseNotes.md b/ReleaseNotes.md index f868fdf..d4af0fd 100644 --- a/ReleaseNotes.md +++ b/ReleaseNotes.md @@ -1,5 +1,9 @@ # RELEASE NOTES +## Release 0.6.6 + +In this release, we add a FASTQ sorting function to the Xengsort module. Due to asynchronous multi-threading in the classification step, Xengsort produces FASTQ output with non-deterministic sort order. BWA produces subtly different mapping results when reads in otherwise identical FASTQ inputs are shuffled ([see note from BWA developer here](https://github.com/lh3/bwa/issues/192#issuecomment-380612006)). The slight mapping differences are not enough to impact overall results, but do prevent fully reproducible results when Xengsort is used and reads are not sorted. The addition of the sorting function allows for fully reproducible results, with no additional user action required. + ## Release 0.6.5 In this minor release, we fix a `subscript out of bounds` bug in `bin/wes/sequenza_seg_na_window.R`. diff --git a/nextflow.config b/nextflow.config index 65066d4..bcbce08 100644 --- a/nextflow.config +++ b/nextflow.config @@ -45,13 +45,13 @@ manifest { homePage = "https://github.com/TheJacksonLaboratory/cs-nf-pipelines" mainScript = "main.nf" nextflowVersion = "!>=22.04.3" - version = "0.6.4" + version = "0.6.6" author = 'Michael Lloyd, Brian Sanderson, Barry Guglielmo, Sai Lek, Peter Fields, Harshpreet Chandok, Carolyn Paisie, Gabriel Rech, Ardian Ferraj, Anuj Srivastava. Copyright Jackson Laboratory 2024' } profiles { sumner { includeConfig "config/profiles/sumner.config" } - sumner2 { includeConfig "config/profiles/sumner2.config" } + sumner2 { includeConfig "config/profiles/sumner2.config" } elion { includeConfig "config/profiles/elion.config" } }