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Updating HCOP and HGNCHCOP SABs and introducing MGI #3

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benstear opened this issue Jan 9, 2024 · 1 comment
Open

Updating HCOP and HGNCHCOP SABs and introducing MGI #3

benstear opened this issue Jan 9, 2024 · 1 comment
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enhancement New feature or request

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@benstear
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benstear commented Jan 9, 2024

We use HGNC Comparison of Orthology Predictions (HCOP) tool to get the mouse gene -to- human gene mappings.

Currently, we use HGNCHCOP as the SAB for the relationship between the mouse and human gene Concept nodes and HCOP as the SAB for the mouse gene nodes.

Changes being made are:

  • Relationship SAB HGNCHCOP is being changed to HCOP.
  • We will use MGI Codes for the mouse genes so the HCOP SAB for the mouse genes will be changed to MGI.
  • The only other dataset that uses the mouse gene nodes is the gene-phenotype mapping file which will be changed accordingly (HCOP will be changed to MGI).
@benstear benstear added the enhancement New feature or request label Jan 9, 2024
@benstear benstear self-assigned this Jan 9, 2024
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benstear commented Jan 9, 2024

The nodes and edges files (OWLNETS_node_metadata.txt and OWLNETS_edgelist.txt) for the orthologs mapping file has been updated, ingested into a local graph db for testing and has been uploaded to globus (globus is only relevant for the Data Distillery project).

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