From 43955e5be7d5926427c09b24f2fd2dc3ae94a77d Mon Sep 17 00:00:00 2001 From: ben stear Date: Tue, 14 Nov 2023 15:56:31 -0500 Subject: [PATCH] Update data_dict.md --- petagraph/data_dict.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/petagraph/data_dict.md b/petagraph/data_dict.md index c13ffc9..c6d8358 100644 --- a/petagraph/data_dict.md +++ b/petagraph/data_dict.md @@ -25,7 +25,6 @@ For clarity, all schema figures in this document follow this node color format: [Human Phenotype Ontology to Mouse Phenotype mappings (HPOMP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-phenotype-ontology-to-mouse-phenotype-mappings-hpomp) [Human-Rat ENSEMBL orthologs (RATHCOP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#human-rat-ensembl-orthology-rathcop) [Homo Sapiens Chromosomal Location Ontology (HSCLO)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#homo-sapiens-chromosomal-location-ontology-hsclo) -[GENCODE-HSCLO mappings (GENCODEHSCLO)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#gencode-hsclo-mappings-gencodehsclo) [LINCS L1000 Gene-Perturbagen Associations (LINCS)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#lincs-l1000-gene-perturbagen-associations-lincs) [Connectivity Map (CMAP)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#connectivity-map-cmap) [Molecular Signatures Database (MSIGDB)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#molecular-signatures-database-msigdb) @@ -36,7 +35,7 @@ For clarity, all schema figures in this document follow this node color format: [GlyGen (GLYGEN)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#glygen-computational-and-informatics-resources-for-glycoscience-glygen) [Gabriella Miller Kids First data (KF)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#gabriella-miller-kids-first-kf----phenotypes-and-variants-per-gene) [4D Nucleome Program (4DN)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#4d-nucleome-program-4dn) - +# "[GENCODE-HSCLO mappings (GENCODEHSCLO)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#gencode-hsclo-mappings-gencodehsclo) " ## Genotype-Tissue Expression Portal, Expression data (GTEXEXP) **Source**: Median transcript per million (TPM) expression levels were ingested from the file `GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_median_tpm.gct` located on the GTEx Portal website at **[https://gtexportal.org/home/datasets](https://gtexportal.org/home/datasets)**.