From 2fc2479c0154764262a5ad19d6181e0bd76f850e Mon Sep 17 00:00:00 2001
From: ben stear <bjs385@drexel.edu>
Date: Tue, 14 Nov 2023 16:00:25 -0500
Subject: [PATCH] Update data_dict.md

---
 petagraph/data_dict.md | 19 +------------------
 1 file changed, 1 insertion(+), 18 deletions(-)

diff --git a/petagraph/data_dict.md b/petagraph/data_dict.md
index c6d8358..5b26670 100644
--- a/petagraph/data_dict.md
+++ b/petagraph/data_dict.md
@@ -35,8 +35,7 @@ For clarity, all schema figures in this document follow this node color format:
 [GlyGen (GLYGEN)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#glygen-computational-and-informatics-resources-for-glycoscience-glygen)  
 [Gabriella Miller Kids First data (KF)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#gabriella-miller-kids-first-kf----phenotypes-and-variants-per-gene)  
 [4D Nucleome Program (4DN)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#4d-nucleome-program-4dn)  
-# "[GENCODE-HSCLO mappings (GENCODEHSCLO)](https://github.com/TaylorResearchLab/Petagraph/blob/main/petagraph/data_dict.md#gencode-hsclo-mappings-gencodehsclo) "
-  
+
 ## Genotype-Tissue Expression Portal, Expression data (GTEXEXP) 
 **Source**: Median transcript per million (TPM) expression levels were ingested from the file `GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_median_tpm.gct` located on the GTEx Portal website at **[https://gtexportal.org/home/datasets](https://gtexportal.org/home/datasets)**.  
 
@@ -200,22 +199,6 @@ MATCH (c1:Concept)-[:contains_chromosome{SAB:'HSCLO'}]->(c2:Concept)-[:above_1Mb
 RETURN * LIMIT 1
 ```
 
----
-## GENCODE-HSCLO mappings (GENCODEHSCLO)
-**Source**: ... 
-
-**Preproccessing**: ... 
-
-<img src="https://github.com/TaylorResearchLab/Petagraph/blob/main/figures/publication_figures/schema_figures/GENCODEHSCLO.png" alt="drawing" width="800"/>
-
-**Schema Description**: ...
-
-```cypher
-// Cypher query to reproduce the schema figure
-match (a:Code {SAB:'GENCODE'})-[r0:CODE]-(b:Concept)-[r1]-(c:Concept)-[r2:CODE]-(d:Code {SAB:'HSCLO'})
-return * limit 1
-```
-
 ---
 ### LINCS L1000 Gene-Perturbagen Associations (LINCS)
 **Source**: The LINCS L1000 Connectivity Map dataset was obtained from the Ma’ayan Lab Harmonizome portal at [https://maayanlab.cloud/Harmonizome/search?t=all&q=l1000](https://maayanlab.cloud/Harmonizome/search?t=all&q=l1000) (Duan et al. 2014; Rouillard et al. 2016). We introduced gene-small molecule perturbagen relationships to Petagraph based on the LINCS L1000 edge list.